Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1056 268 7e-68 >seq1056 Length=137163284 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34040500 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 34040559 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 34040560 CTGCATCCCGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 34040619 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 34040620 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 34040662 Score = 125 bits (138), Expect = 6e-25 Identities = 78/84 (93%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| Sbjct 34040753 AGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTATCA 34040812 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 34040813 CATCTCATTTGGTTCTCGGATTCC 34040836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40098338743932