Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq4061 118 6e-24 seq1657 93.3 2e-16 seq1651 93.3 2e-16 seq793 75.2 6e-11 >seq4061 Length=12628 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 3880 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 3939 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 3940 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 3966 >seq1657 Length=238541 Score = 93.3 bits (102), Expect = 2e-16 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| ||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 168620 CTGTCCAAGCATAGTTCACCATCTCTCAGGTCCTAACACATGCGCTCGTGCTCCACCTCC 168561 Query 897 CCGACGCGG 905 | | ||||| Sbjct 168560 CTGGCGCGG 168552 >seq1651 Length=26350515 Score = 93.3 bits (102), Expect = 2e-16 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| ||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 7291360 CTGTCCAAGCATAGTTCACCATCTCTCAGGTCCTAACACATGCGCTCGTGCTCCACCTCC 7291419 Query 897 CCGACGCGG 905 | | ||||| Sbjct 7291420 CTGGCGCGG 7291428 >seq793 Length=147911612 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 838 TGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCC 897 |||||||||||||||||| ||||||| ||||||| | || |||| ||||||||||||| Sbjct 69482682 TGCCCAGGCATAGTTCACAATCTTTCATTTCCTAACACCTGTGCTCATGCTCCACCTCCC 69482741 Query 898 C 898 | Sbjct 69482742 C 69482742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859488665602