Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq25851 114 7e-23
seq8175 93.3 2e-16
seq43713 75.2 6e-11
>seq25851
Length=153482349
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 100564387 CTGCCCAGGCACAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 100564328
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 100564327 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 100564301
Score = 75.2 bits (82), Expect = 6e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 838 TGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCC 897
|||||||||||||||||||||||||| ||||||| || |||| |||||||||||||
Sbjct 70569863 TGCCCAGGCATAGTTCACCATCTTTCATTTCCTAACATCTGTGCTCATGCTCCACCTCCC 70569922
Query 898 C 898
|
Sbjct 70569923 C 70569923
>seq8175
Length=11768
Score = 93.3 bits (102), Expect = 2e-16
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct 5804 CTGCCCAGGCATAGTTCACCATCTTTCTGGTCCTAACACGTGCTCTCGTGCTCCACCTCC 5863
Query 897 CCGACGCGG 905
| | || ||
Sbjct 5864 CTGGCGTGG 5872
Score = 93.3 bits (102), Expect = 2e-16
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct 6587 CTGCCCAGGCATAGTTCACCATCTTTCTGGTCCTAACACGTGCTCTCGTGCTCCACCTCC 6646
Query 897 CCGACGCGG 905
| | || ||
Sbjct 6647 CTGGCGTGG 6655
>seq43713
Length=77800216
Score = 75.2 bits (82), Expect = 6e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895
||| ||||||| ||||||||||||||| ||||||||| | ||| || ||||||||||||
Sbjct 34405761 CTGACCAGGCACAGTTCACCATCTTTCAGGTCCTAACACGTGCCCTGGTGCTCCACCTC 34405703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2858984594430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |