Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1225 251 6e-63 >seq1225 Length=8632973 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 6475383 TAGGAGGTTTGAAATGGACCGAGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 6475324 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 6475323 GCTACATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 6475264 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| |||||||||||||||||||||| || |||| Sbjct 6475263 CACCTACTTTGCATTGATGGATGGAAAGGTGTATGACATTACAG 6475220 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 6475125 CAGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 6475066 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 | |||||||||||||| ||||| || Sbjct 6475065 ATATCTCATTTGGTTCTCGGATCCC 6475041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40108227428052