Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq12683 271 6e-69 seq17211 104 2e-18 >seq12683 Length=1397203 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214214 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 214155 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 214154 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 214095 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 214094 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 214052 Score = 140 bits (154), Expect = 3e-29 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 213959 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 213900 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||||| ||||| ||||| ||||| Sbjct 213899 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 213865 >seq17211 Length=1804 Score = 104 bits (114), Expect = 2e-18 Identities = 87/106 (82%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 5154 TGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACA 5213 ||||||| | |||| |||||||||| |||||||||| | |||||||||| ||||||| Sbjct 1 TGTATGACAACACACGGTGGGCTGGAGGCCAGCGTGTAGTTATCTCCCCAG--ACCCACA 58 Query 5214 GAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||| | || || |||||||||| ||||| ||||| ||||| Sbjct 59 GAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40163686043968