Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq31028 334 6e-88
seq34968 268 7e-68
>seq31028
Length=13018
Score = 334 bits (370), Expect = 6e-88
Identities = 238/272 (88%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| || ||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 3142 ATGTGTGGCGGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 3201
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
| |||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 3202 GTCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAGGAGACTTTTGGGCA 3261
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||| |||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 3262 GAGTCAAGCTTGTTGGGCTTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 3321
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|| | |||| ||||||||||| |||||||||| | |||||||||| ||||||||||||
Sbjct 3322 GACAACACACAGTGGGCTGGAGGCCAGCGTGTAGTTATCTCCCCAG--ACCCACAGAGTC 3379
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | || ||||||||||||| ||||| ||
Sbjct 3380 CCCTCACATCTCTCATTTGGTTCTCGGATTCC 3411
>seq34968
Length=1464425
Score = 268 bits (296), Expect = 7e-68
Identities = 157/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149376 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 1149435
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1149436 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 1149495
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1149496 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 1149538
Score = 129 bits (142), Expect = 5e-26
Identities = 80/86 (93%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 1149631 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 1149690
Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265
||||||||||||||||| ||||| ||
Sbjct 1149691 CACATCTCATTTGGTTCTCGGATTCC 1149716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40057239098016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |