Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq31028 334 6e-88 seq34968 268 7e-68 >seq31028 Length=13018 Score = 334 bits (370), Expect = 6e-88 Identities = 238/272 (88%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || ||||||| |||||||||||||||||||| |||||| ||||||||||||| Sbjct 3142 ATGTGTGGCGGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 3201 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 | |||||||| ||||| |||||||||||||| ||| ||||||||||| |||||||||||| Sbjct 3202 GTCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAGGAGACTTTTGGGCA 3261 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||||||| Sbjct 3262 GAGTCAAGCTTGTTGGGCTTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 3321 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || | |||| ||||||||||| |||||||||| | |||||||||| |||||||||||| Sbjct 3322 GACAACACACAGTGGGCTGGAGGCCAGCGTGTAGTTATCTCCCCAG--ACCCACAGAGTC 3379 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | || ||||||||||||| ||||| || Sbjct 3380 CCCTCACATCTCTCATTTGGTTCTCGGATTCC 3411 >seq34968 Length=1464425 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149376 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 1149435 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 1149436 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 1149495 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1149496 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 1149538 Score = 129 bits (142), Expect = 5e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | | Sbjct 1149631 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 1149690 Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||| ||||| || Sbjct 1149691 CACATCTCATTTGGTTCTCGGATTCC 1149716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40057239098016