Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003113.1 Length=9476 Score E Sequences producing significant alignments: (Bits) Value seq42544 129 4e-26 >seq42544 Length=1694 Score = 129 bits (142), Expect = 4e-26 Identities = 342/515 (66%), Gaps = 8/515 (2%) Strand=Plus/Plus Query 8354 GTTTATGGACTTCCCAAAGGATGAGTTGTTGAAGCCGGGAAAGGACACACGTTTAATAAA 8413 ||| ||||||||||| |||||||| | ||||| || |||| || ||||| || || Sbjct 979 GTTCATGGACTTCCCCAAGGATGAACTTTTGAAAGTTGGTAAGGCTACTCGTTTGATTAA 1038 Query 8414 TGGAGCCCCTTTACACCACACGCTAGACATGCGCCGTTACTTAATGGAGTTCTTTGCCGC 8473 ||| |||||| | ||||| || |||| ||||| | || | || ||| ||| | Sbjct 1039 TGGTGCCCCTCTCCACCATACTTTAGATATGCGTAGATATCTGGGAGAATTCCTTGAGTC 1098 Query 8474 AATAAC-CACCATTAACAACAAGATCGCTGTAGGTATAGATGTCCACTCGGGAGATTGGG 8532 || || | || ||||||||| || || || |||||||| || || || |||| Sbjct 1099 CATCGTTCATC-TTGGCAACAAGATTGCGGTCGGCATAGATGTACATTCCACGGACTGGG 1157 Query 8533 CATTGA--TACATGGAGGAGCAGA-TGATGTTGTAGATGAGGATTATAGCGGCTTTGGAC 8589 |||| || | | ||| |||| ||| || || |||||||||||| || |||| Sbjct 1158 --TTGAAGTAAACGCTGGA-CAGAATGACGTAGTGAATGAGGATTATAAAAATTTCGGAC 1214 Query 8590 CTGGTTTCCACTCACAGTGGTTGACCGTGATTCGTCGCATAGCTATTGCGTGGTGTAAAT 8649 |||| || || |||||| | || || | || ||| | || ||| ||| Sbjct 1215 CTGGCTTTCATAGTCAGTGGATCGATGTAATATCTGAGATTGCTGTCGCCTGGACTAAGC 1274 Query 8650 ATCACAAGAAAGTAGATAAGGAGTACGAGGATGTTGTTAGCTGCCTTATATTGGAGCTGC 8709 | | |||| || || || ||| | || | |||| | | ||| ||| Sbjct 1275 GTTATAAGACCAATGACCCCGAATATGAGAACGTAATCCGCTGTTTGTTTAGGGAATTGC 1334 Query 8710 AGAATGCTTATCACGTGGCGGGTGATCTCGTCTACCAAGTACTCTGTGGTTCTCCATCAG 8769 |||||||| || | || || || || | | |||||| |||||||| ||||| | Sbjct 1335 AGAATGCTACACATATCGCAGGGGACCTAATATTCCAAGTCCTCTGTGGCTCTCCTAGTG 1394 Query 8770 GTGCCTTCGCTACCGACAGAATTAACAGTATAGCAAATCTTTGCTATCATTGCTTGTGTT 8829 | ||||| |||||||| ||||| || ||| | || ||| |||| || |||||||| |||| Sbjct 1395 GGGCCTTTGCTACCGATAGAATCAATAGTCTGGCTAATATTTGTTACCATTGCTTATGTT 1454 Query 8830 ACTTGCGAAAGTATAGAACCCTAACTGGGTTCTGG 8864 | || || || ||||| || || ||| || ||| Sbjct 1455 ATTTACGCAAATATAGTACTTTAGTTGGTTTTTGG 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30161947601920