Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003113.1
Length=9476
Score E
Sequences producing significant alignments: (Bits) Value
seq42544 129 4e-26
>seq42544
Length=1694
Score = 129 bits (142), Expect = 4e-26
Identities = 342/515 (66%), Gaps = 8/515 (2%)
Strand=Plus/Plus
Query 8354 GTTTATGGACTTCCCAAAGGATGAGTTGTTGAAGCCGGGAAAGGACACACGTTTAATAAA 8413
||| ||||||||||| |||||||| | ||||| || |||| || ||||| || ||
Sbjct 979 GTTCATGGACTTCCCCAAGGATGAACTTTTGAAAGTTGGTAAGGCTACTCGTTTGATTAA 1038
Query 8414 TGGAGCCCCTTTACACCACACGCTAGACATGCGCCGTTACTTAATGGAGTTCTTTGCCGC 8473
||| |||||| | ||||| || |||| ||||| | || | || ||| ||| |
Sbjct 1039 TGGTGCCCCTCTCCACCATACTTTAGATATGCGTAGATATCTGGGAGAATTCCTTGAGTC 1098
Query 8474 AATAAC-CACCATTAACAACAAGATCGCTGTAGGTATAGATGTCCACTCGGGAGATTGGG 8532
|| || | || ||||||||| || || || |||||||| || || || ||||
Sbjct 1099 CATCGTTCATC-TTGGCAACAAGATTGCGGTCGGCATAGATGTACATTCCACGGACTGGG 1157
Query 8533 CATTGA--TACATGGAGGAGCAGA-TGATGTTGTAGATGAGGATTATAGCGGCTTTGGAC 8589
|||| || | | ||| |||| ||| || || |||||||||||| || ||||
Sbjct 1158 --TTGAAGTAAACGCTGGA-CAGAATGACGTAGTGAATGAGGATTATAAAAATTTCGGAC 1214
Query 8590 CTGGTTTCCACTCACAGTGGTTGACCGTGATTCGTCGCATAGCTATTGCGTGGTGTAAAT 8649
|||| || || |||||| | || || | || ||| | || ||| |||
Sbjct 1215 CTGGCTTTCATAGTCAGTGGATCGATGTAATATCTGAGATTGCTGTCGCCTGGACTAAGC 1274
Query 8650 ATCACAAGAAAGTAGATAAGGAGTACGAGGATGTTGTTAGCTGCCTTATATTGGAGCTGC 8709
| | |||| || || || ||| | || | |||| | | ||| |||
Sbjct 1275 GTTATAAGACCAATGACCCCGAATATGAGAACGTAATCCGCTGTTTGTTTAGGGAATTGC 1334
Query 8710 AGAATGCTTATCACGTGGCGGGTGATCTCGTCTACCAAGTACTCTGTGGTTCTCCATCAG 8769
|||||||| || | || || || || | | |||||| |||||||| ||||| |
Sbjct 1335 AGAATGCTACACATATCGCAGGGGACCTAATATTCCAAGTCCTCTGTGGCTCTCCTAGTG 1394
Query 8770 GTGCCTTCGCTACCGACAGAATTAACAGTATAGCAAATCTTTGCTATCATTGCTTGTGTT 8829
| ||||| |||||||| ||||| || ||| | || ||| |||| || |||||||| ||||
Sbjct 1395 GGGCCTTTGCTACCGATAGAATCAATAGTCTGGCTAATATTTGTTACCATTGCTTATGTT 1454
Query 8830 ACTTGCGAAAGTATAGAACCCTAACTGGGTTCTGG 8864
| || || || ||||| || || ||| || |||
Sbjct 1455 ATTTACGCAAATATAGTACTTTAGTTGGTTTTTGG 1489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 30161947601920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |