Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq31028 354 7e-94
seq34968 271 6e-69
>seq31028
Length=13018
Score = 354 bits (392), Expect = 7e-94
Identities = 256/295 (87%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024
|| ||||||| ||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct 3128 CAGTGAATACTTTGATGTGTGGCGGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACC 3187
Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084
|||||||||||||| |||||||| ||||| |||||||||||||| ||| ||||||||||
Sbjct 3188 AGGAACCTAAGAGTGTCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAG 3247
Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144
| ||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||
Sbjct 3248 GAGACTTTTGGGCAGAGTCAAGCTTGTTGGGCTTCAAGATCACCTACTTTGCACTGATGG 3307
Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204
|||||||||||||||| | |||| ||||||||||| |||||||||| | ||||||||||
Sbjct 3308 ATGGAAAGGTGTATGACAACACACAGTGGGCTGGAGGCCAGCGTGTAGTTATCTCCCCAG 3367
Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|||||||||||||| | || || |||||||||| ||||| ||||| |||||
Sbjct 3368 --ACCCACAGAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 3420
>seq34968
Length=1464425
Score = 271 bits (300), Expect = 6e-69
Identities = 158/163 (97%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149376 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 1149435
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1149436 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 1149495
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1149496 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 1149538
Score = 140 bits (154), Expect = 3e-29
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1149631 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 1149690
Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|||||| |||||||||| ||||| ||||| |||||
Sbjct 1149691 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 1149725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40149897623488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |