Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq31028 354 7e-94 seq34968 271 6e-69 >seq31028 Length=13018 Score = 354 bits (392), Expect = 7e-94 Identities = 256/295 (87%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| ||||||| | ||||||| |||||||||||||||||||| |||||| Sbjct 3128 CAGTGAATACTTTGATGTGTGGCGGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACC 3187 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||| |||||||| ||||| |||||||||||||| ||| |||||||||| Sbjct 3188 AGGAACCTAAGAGTGTCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAG 3247 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||| Sbjct 3248 GAGACTTTTGGGCAGAGTCAAGCTTGTTGGGCTTCAAGATCACCTACTTTGCACTGATGG 3307 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| | |||| ||||||||||| |||||||||| | |||||||||| Sbjct 3308 ATGGAAAGGTGTATGACAACACACAGTGGGCTGGAGGCCAGCGTGTAGTTATCTCCCCAG 3367 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||||||||| | || || |||||||||| ||||| ||||| ||||| Sbjct 3368 --ACCCACAGAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 3420 >seq34968 Length=1464425 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149376 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 1149435 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1149436 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 1149495 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1149496 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 1149538 Score = 140 bits (154), Expect = 3e-29 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 1149631 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 1149690 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||||| ||||| ||||| ||||| Sbjct 1149691 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 1149725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40149897623488