Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003877.1 Length=8747 Score E Sequences producing significant alignments: (Bits) Value seq43849 165 5e-37 >seq43849 Length=2497 Score = 165 bits (182), Expect = 5e-37 Identities = 223/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 5636 CTAAAAGCTAAGGTGGAAAGGACAGAAACCCCAATGTTTTGTGGATGGAGACTAACTCCA 5695 |||||||| |||||| ||||| ||||| || ||||| ||||| |||| | | | Sbjct 2487 CTAAAAGCAAAGGTGATTAGGACTGAAACACCTATGTTCTGTGGTTGGAACTTGAGCAGA 2428 Query 5696 TATGGGATTGTGAAGGAGCCTGAATTAGTCTATAATCGCTTTCAAGTGGCCATTGAAGAG 5755 | || ||||| || ||||| ||| | ||||| ||| | ||| || |||| ||| Sbjct 2427 CACGGAATTGTCAAAGAGCCGGAACTTGTCTACAATAGATTTATGGTTGCCAAAGAAAGA 2368 Query 5756 GGAAAGGTCTTGGAGTGTCTGGAAAATTATGCAATCGAGGTTTCTTATGCCTACAGTTTA 5815 ||||| || |||| || || || |||||||| || || ||||||||||| |||| ||| Sbjct 2367 GGAAACGTGATGGAATGCCTTGAGAATTATGCCATAGAAGTTTCTTATGCTTACATGTTA 2308 Query 5816 AGTGAGAGGCTGTATGAAGTTTTGAAAAGTGAAAGGCAAGTTCAGTATCATCAAGCTGTG 5875 |||||| ||| ||||| ||| ||||||| ||| ||| || | |||||||| || ||| Sbjct 2307 GGTGAGAAGCTCTATGAGGTTCTGAAAAGAGAAGAGCAGATTGAATATCATCAGGCAGTG 2248 Query 5876 GTTAGATTTATAGTCACGCACATTGACA-AACTCAAAACAAAAGTGAGGGACCTTTTCTT 5934 ||| | || || |||| | | || || | || || || ||||| | |||||| || | Sbjct 2247 GTTCGTTTCATTGTCAAG-AGGCTGTCACATCTGAAGACGAAAGTAAAGGACCTCTTTTC 2189 Query 5935 AGAACAAT 5942 ||| |||| Sbjct 2188 AGATCAAT 2181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27832703978848