Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq97427 118 6e-24 seq72709 78.8 5e-12 seq8711 77.0 2e-11 seq27082 75.2 6e-11 >seq97427 Length=343 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 110 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 169 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 170 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 196 >seq72709 Length=247 Score = 78.8 bits (86), Expect = 5e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 842 CAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCG 899 |||||||||||||||||||||||||||| |||| | ||||| |||||| |||||||| Sbjct 115 CAGGCATAGTTCACCATCTTTCGGGTCCCAACGTGTACGCTCTTGCTCCGCCTCCCCG 172 >seq8711 Length=640207 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||| ||||||||| || |||| |||||||||| | Sbjct 420509 CTGCCCAGGCATAGTTCACCACCTTTCAGGTCCTAACATTTGTGCTCATGCTCCACCTTC 420450 Query 897 CC 898 || Sbjct 420449 CC 420448 >seq27082 Length=3259343 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 838 TGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCC 897 |||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||| Sbjct 3214757 TGCCCAGGCATAGTTCACCATCTTCTTTTTCCTAACACATGTGCTCATGCTCCACCTCCC 3214816 Query 898 C 898 | Sbjct 3214817 C 3214817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2856802124976