Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_028975.1 Length=9654 Score E Sequences producing significant alignments: (Bits) Value seq53206 300 1e-77 seq45301 255 4e-64 >seq53206 Length=211 Score = 300 bits (332), Expect = 1e-77 Identities = 193/211 (91%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 9135 CCTGTGGTTGGATTTCCACCGTTATCTCGTCGTTAAGAGAGTAACCCCTCTTCTCTCGCT 9194 ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 1 CCTGTGGTTGGATTTCCACCGTTATCTCGTCGTTAAGGGAGCAACCCCTCTTTTCTCGCT 60 Query 9195 TATGGGGGCATCGTTAAGCGGGCGTGTGACCTATTGAAAGGTGGGTTCCCTACGTTAAGG 9254 ||| |||| || |||||||||||||| |||| ||||| || ||||||||||||||||||| Sbjct 61 TATAGGGGTATTGTTAAGCGGGCGTGCGACCCATTGAGAGATGGGTTCCCTACGTTAAGG 120 Query 9255 GTAGTTGTGGTTTAGAATAAACCTCCATGGTTCCGACCTGCCATGTTTCAAGCGATCGGC 9314 ||||||| |||||||| |||| |||||||||||||||||||||| || ||| |||||| Sbjct 121 GTAGTTGAAGTTTAGAACAAACTTCCATGGTTCCGACCTGCCATGATTAAAGTGATCGGT 180 Query 9315 AGTTCTGGGTAAGAAACAACCCTGTGCTTGG 9345 ||||||||||||||||||||||||||||||| Sbjct 181 AGTTCTGGGTAAGAAACAACCCTGTGCTTGG 211 >seq45301 Length=200 Score = 255 bits (282), Expect = 4e-64 Identities = 180/202 (89%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 8901 TAGAGCCATTAG-GTGTGTTTTAGTAAATATTAGTAGTTTGCACTTCCCTGAGTTCCAGG 8959 ||||| | |||| |||||| |||||||||||||||||||| ||||||| | |||||||| Sbjct 200 TAGAGTC-TTAGTGTGTGTCTTAGTAAATATTAGTAGTTTCCACTTCCTTAGGTTCCAGG 142 Query 8960 TCTAGAACCCAGGAAAGACCCAAAAGAGTCCTGGTGGGCGTTTAGCCATTTTAAAAACCT 9019 |||||||||||||| ||||| |||||||||||||| ||||||||||| || | ||||| Sbjct 141 TCTAGAACCCAGGAGAGACCTAAAAGAGTCCTGGTTGGCGTTTAGCC--GTTCAGAACCT 84 Query 9020 CTGCACCTCGTAGGCCACACCAACGTCAATCATCGTGTGCCTTATGTGGGCAAGTTAACC 9079 |||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 83 CTGCACTGCATAGGCCACACCAAAGTCAATCATCGTGTGCCTTATGTTGGCAAGTTAACC 24 Query 9080 GTGTTGTGGCGGCAACCGGAAA 9101 | |||||||||||||||||||| Sbjct 23 GAGTTGTGGCGGCAACCGGAAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30730679241024