Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq112 250 2e-62 >seq112 Length=7321034 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6453081 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTAAGTGTAATAGG 6453022 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 6453021 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 6452962 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 6452961 ACCTACTTTGCAGTGATGGATGGAAAGGTGTATGACATCACAG 6452919 Score = 125 bits (138), Expect = 6e-25 Identities = 78/84 (93%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| Sbjct 6452827 AGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTATCA 6452768 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 6452767 CATCTCATTTGGTTCTCGGATTCC 6452744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117187722248