Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq20214 250 2e-62 >seq20214 Length=3068 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2958 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGCGCCAGATACTGTGCTGAGTGTAATAGG 2899 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || ||||||||||||||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 2898 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGTTGGGTCTCAAGATC 2839 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 2838 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 2796 Score = 118 bits (130), Expect = 8e-23 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||| || || |||||||||| || Sbjct 2703 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGACACTCATAGAGTCCCTTATC 2644 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 | |||||||||||||| ||||| || Sbjct 2643 ATATCTCATTTGGTTCTCGGATCCC 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39738827080008