Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq20214 253 2e-63 >seq20214 Length=3068 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2958 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGCGCCAGATACTGTGCTGAGTGTAATAGG 2899 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||| Sbjct 2898 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGTTGGGTCTCAAGATC 2839 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 2838 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 2796 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| Sbjct 2703 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGACACTCATAGAGTCCCTTATC 2644 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||||| ||||| ||||| Sbjct 2643 ATATCTCATTTGGTTCTCGGATCCCAGGCACCAG 2610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39830749069744