Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq44395 244 8e-61 >seq44395 Length=1664392 Score = 244 bits (270), Expect = 8e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 466880 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGCGCCAGATACTGTGCTGAGTGTAATAGG 466821 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || ||||||||||||||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 466820 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGTTGGGTCTCAAGATC 466761 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 466760 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 466718 Score = 118 bits (130), Expect = 9e-23 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||| || || |||||||||| || Sbjct 466625 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGACACTCATAGAGTCCCTTATC 466566 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 | |||||||||||||| ||||| || Sbjct 466565 ATATCTCATTTGGTTCTCGGATCCC 466541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40095494901000