Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq44395 250 2e-62 >seq44395 Length=1664392 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 466880 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGCGCCAGATACTGTGCTGAGTGTAATAGG 466821 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||| Sbjct 466820 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGTTGGGTCTCAAGATC 466761 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 466760 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 466718 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| Sbjct 466625 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGACACTCATAGAGTCCCTTATC 466566 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||||| ||||| ||||| Sbjct 466565 ATATCTCATTTGGTTCTCGGATCCCAGGCACCAG 466532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40188241918000