Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq15111 302 4e-78 seq4641 145 6e-31 seq1835 145 6e-31 seq31194 140 3e-29 seq3674 127 2e-25 seq8834 109 4e-20 >seq15111 Length=364154 Score = 302 bits (334), Expect = 4e-78 Identities = 226/264 (86%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| |||||||| |||| |||||||||| |||| |||| ||||| Sbjct 164602 ATGTGTAGCAGATGCCAAGGAAAGCACAGGAACTTTGAAATGGGCCGGAAACCCTAGAGT 164543 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||| |||||||| | |||||||||||||||||||| |||| |||||| Sbjct 164542 GCCAGATACTGTGCCGAGTGTAACACACTGCATCCTGCTGAGGAAGGAAACTTCTGGGCA 164483 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGG-AAAGGTGTA 5172 ||||| | |||||||||| |||| ||||||||||||||||||||||| || |||| |||| Sbjct 164482 GAGTCAAACATGTTGGGCTTCAAGATCACCTACTTTGCGCTGATGGACGGAAAAGATGTA 164423 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 || || ||||| |||||||||||||||| |||||| |||||||||||| | |||| ||| Sbjct 164422 TGGCATTACAGAATGGGCTGGATGCCAGCATGTGGGCATCTCCCCAGATGCTCACAAAGT 164363 Query 5233 CCCTTGTCACATCTCATTTGGTTC 5256 ||| ||||||| ||||||||| Sbjct 164362 TCCTCACCACATCTTATTTGGTTC 164339 Score = 235 bits (260), Expect = 4e-58 Identities = 150/163 (92%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 159928 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCCGAGTGTAACAGG 159869 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||| ||||||||||| ||| ||||||||||||| ||| Sbjct 159868 CTGCATCCTGCTGAGGAGGGAGACTTCTGGGCAGAGTCCAGCTTGTTGGGCCTCAAGATC 159809 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||||||||||| ||||| |||||||| || |||| Sbjct 159808 ACCTACTTTGCGCTGATGGACGGAAAAGTGTATGACATTACAG 159766 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| | Sbjct 159680 CAGAATGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACAGAGTTCCTTACC 159621 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 159620 ACATCTCATTTGGTTCTCGG 159601 >seq4641 Length=956120 Score = 145 bits (160), Expect = 6e-31 Identities = 189/258 (73%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 4999 CAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAG 5058 |||| ||| ||| |||| || | ||||| |||||| | ||| || || |||||||| | Sbjct 954920 CAGCTGATACCAAGGAAGGCTTCGGAGGATTGAAACGCACCAGGCACTAAAGAGTGCTGG 954861 Query 5059 ATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC 5118 | ||||||| || |||| | ||| | || | ||||| ||| |||||| ||| || | Sbjct 954860 ACACTGTGCCAAGCCTAATGGACTGTACCCCGATGAGGCAGGAGACTTTGGGGTAG--TA 954803 Query 5119 GAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATAT 5178 |||||||||| |||| |||||| || || ||||||||||||||||| ||||| || Sbjct 954802 AGCCATGTTGGGCTTCAAGATCACCCACGGTGTCCTGATGGATGGAAAGGTCTATGACAT 954743 Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 ||||||||| |||||| || || || |||||| ||||| |||||| || Sbjct 954742 --CAGAGTGGGGCAGATGCC--CGCATGAGACTCTCCCAGGATAC---CAGAGTTCCAGA 954690 Query 5239 TCACATCTCATTTGGTTC 5256 ||||| ||| |||||| Sbjct 954689 CTACATCACATGTGGTTC 954672 >seq1835 Length=1285561 Score = 145 bits (160), Expect = 6e-31 Identities = 190/259 (73%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--AGTGCCA 5057 ||| | ||| |||||||| |||| | || || || |||| ||||||||| ||||| Sbjct 564803 AGCTGCTGCAAGGGAAAGTGTAGGTGATTCGAGATAGACCAGGAACCTAACTCAGTGCTT 564862 Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 ||| || |||||||| | | |||||||||||| ||||||||| ||| | ||| | Sbjct 564863 GATTCTCTGCTGAGTATGACAGGCTGCATCCTATTGAGGAAGGAGAC--TCAGGCCTATC 564920 Query 5118 CGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATA 5177 | ||||||| | | |||| || |||||||| | | | | ||||| | ||||| | Sbjct 564921 CATGCATGTTTGACTTCAAGATTCGTTACTTTGCTCCGGTAGGCAGAAAGAT-TATGAGA 564979 Query 5178 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5237 |||||||||||||| ||| ||||| || | || ||| || |||||||||||||| Sbjct 564980 TCACAGAGTGGGCTAGATTCCAGCATGCGAGA--CTCTCCGGATACCCACAGAGTTGTAC 565037 Query 5238 GTCACATCTCATTTGGTTC 5256 |||||||||| |||||| Sbjct 565038 ATCACATCTCAGGTGGTTC 565056 >seq31194 Length=63334 Score = 140 bits (154), Expect = 3e-29 Identities = 186/252 (74%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5063 ||||||| |||||||||| ||| || | | ||||| |||| || | || ||||||| Sbjct 28294 GATGCCAAAGAAAGCATAGAAGGGTTAATACAAACCGGAAACC-AACA-TGTAAGATACT 28351 Query 5064 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 || | ||| |||| || || ||||| ||| ||||||||||||| | |||| Sbjct 28352 ACATGGACTAAAAT-GGCTACAAGCTACTGAGAAAGCAAGCTTTTGGGCAGAGGCAAGCA 28410 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||| ||||| || ||||| ||| ||||||| |||| | |||| |||| | Sbjct 28411 TGTTGGG-CTCAAGGTCTCCTACGTTGGACTGATGG-GAAAAAGATCTATGGCATCAGAA 28468 Query 5184 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACA 5243 | |||| ||||| ||| ||||| |||||||| ||| || ||||||| |||| ||||| Sbjct 28469 AATGGGTTGGATCCCACTGTGTGACAATCTCCCTAGACACTGACAGAGTTCCTTATCACA 28528 Query 5244 TCTCATTTGGTT 5255 | |||||||||| Sbjct 28529 TTTCATTTGGTT 28540 >seq3674 Length=1048365 Score = 127 bits (140), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 5036 GACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAG 5095 |||| ||||||||||||| | | ||| |||||||| |||||| | | ||||| || Sbjct 284202 GACCAAGAACCTAAGAGTG-TGGCTTCTGAGCTGAGTGCAATAGGTCGTGTTCTGCTCAG 284144 Query 5096 GAAGGTGACTTTTGGGCAGAGTC-GAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCT 5154 ||||| ||| | | ||||| | ||| |||| ||||| ||||| ||| | || Sbjct 284143 GAAGGAGAC-CTGGAGCAGAACCTAAGCGCGTTGAACCTCAGGATCACTCACTCGGGGCA 284085 Query 5155 GATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTC 5214 ||||| ||||||| ||||| ||| ||||| |||||||||| || ||||||| |||| Sbjct 284084 GATGGGCGGAAAGGCCTATGACGTCATAGAGTAGGCTGGATGCTGGCATGTGGGACTCTC 284025 Query 5215 CCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGATGC 5264 || || |||| |||||| || | || |||||||| ||||| ||||| Sbjct 284024 CCAAGTTACC--CAGAGTTCCCTCCCAAGCCTCATTTGATTCACAGATGC 283977 >seq8834 Length=687082 Score = 109 bits (120), Expect = 4e-20 Identities = 129/173 (75%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 5084 CATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACC 5143 ||||||||||||||||| ||| | | ||| || ||| ||||| ||||| |||| Sbjct 431685 CATCCTGCTGAGGAAGGAGAC----GAGTAGATTCAAGCCTGTTGTTACTCAAGATCAGT 431630 Query 5144 TACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGT 5203 | | ||| |||||||| | ||| | ||||||||||||||||| || |||| | || | Sbjct 431629 TCCATTGAACTGATGGAAAGTAAGATCTATGATATCACAGAGTGAGCAGGATTCTGGCAT 431570 Query 5204 GTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 | ||||||| | |||||||||||||| | |||||||||| |||| || Sbjct 431569 GAAGGAATCT-CTTGGATACCCACAGAGTTCGGCATCACATCTCACTTGGCTC 431518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39865821524172