Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq15111 318 5e-83 seq1835 181 8e-42 seq4641 158 1e-34 seq31194 154 1e-33 seq3674 129 5e-26 seq8834 114 1e-21 >seq15111 Length=364154 Score = 318 bits (352), Expect = 5e-83 Identities = 252/300 (84%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 4976 ATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5035 |||||||| | | ||||||| |||||||| |||| |||||||||| |||| |||| || Sbjct 164605 ATGATGTGTAGCAGATGCCAAGGAAAGCACAGGAACTTTGAAATGGGCCGGAAACCCTAG 164546 Query 5036 AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGG 5095 ||||||||||||||||| |||||||| | |||||||||||||||||||| |||| ||| Sbjct 164545 AGTGCCAGATACTGTGCCGAGTGTAACACACTGCATCCTGCTGAGGAAGGAAACTTCTGG 164486 Query 5096 GCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGG-AAAGGT 5154 |||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||| | Sbjct 164485 GCAGAGTCAAACATGTTGGGCTTCAAGATCACCTACTTTGCGCTGATGGACGGAAAAGAT 164426 Query 5155 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5214 ||||| || ||||| |||||||||||||||| |||||| |||||||||||| | |||| Sbjct 164425 GTATGGCATTACAGAATGGGCTGGATGCCAGCATGTGGGCATCTCCCCAGATGCTCACAA 164366 Query 5215 AGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGA 5274 ||| ||| | |||||| ||||||||| | | | ||||| ||||| | || | |||||| Sbjct 164365 AGTTCCTCACCACATCTTATTTGGTTCTCAGGTACCAGGCACCAGTGGCC-GGCAGAGGA 164307 Score = 235 bits (260), Expect = 4e-58 Identities = 150/163 (92%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 159928 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCCGAGTGTAACAGG 159869 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || ||||| ||||||||||| ||| ||||||||||||| ||| Sbjct 159868 CTGCATCCTGCTGAGGAGGGAGACTTCTGGGCAGAGTCCAGCTTGTTGGGCCTCAAGATC 159809 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||||||||||| ||||| |||||||| || |||| Sbjct 159808 ACCTACTTTGCGCTGATGGACGGAAAAGTGTATGACATTACAG 159766 Score = 132 bits (146), Expect = 4e-27 Identities = 99/115 (86%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 159680 CAGAATGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACAGAGTTCCTTACC 159621 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGA 5280 ||||| |||||||||| ||| | ||||| ||||| | || | ||||| | |||| Sbjct 159620 ACATCTCATTTGGTTCTCGGGTACCAGGCACCAGTGGCC-GGCAGAGGTAGGTGA 159567 >seq1835 Length=1285561 Score = 181 bits (200), Expect = 8e-42 Identities = 222/299 (74%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||| || | | | ||| |||||||| |||| | || || || |||| Sbjct 564783 CAATGAATACTATGAGGTATAGCTGCTGCAAGGGAAAGTGTAGGTGATTCGAGATAGACC 564842 Query 5025 GGGAACCTAAG--AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGA 5082 ||||||||| ||||| ||| || |||||||| | | |||||||||||| |||||| Sbjct 564843 AGGAACCTAACTCAGTGCTTGATTCTCTGCTGAGTATGACAGGCTGCATCCTATTGAGGA 564902 Query 5083 AGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5142 ||| ||| | ||| | || ||||||| | | |||| || |||||||| | | | Sbjct 564903 AGGAGAC--TCAGGCCTATCCATGCATGTTTGACTTCAAGATTCGTTACTTTGCTCCGGT 564960 Query 5143 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5202 | ||||| | ||||| ||||||||||||||| ||| ||||| || | || ||| || Sbjct 564961 AGGCAGAAAGAT-TATGAGATCACAGAGTGGGCTAGATTCCAGCATGCGAGA--CTCTCC 565017 Query 5203 AGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG 5261 |||||||||||||| |||||||| || |||||| || | ||||||||||||| Sbjct 565018 GGATACCCACAGAGTTGTACATCACATCTCAGGTGGTTCTTGGGTACCAGGTACCAGCG 565076 >seq4641 Length=956120 Score = 158 bits (174), Expect = 1e-34 Identities = 216/297 (73%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA 5036 ||||| || | ||| ||| |||| || | ||||| |||||| | ||| || || |||| Sbjct 954927 TGATGCACAGCTGATACCAAGGAAGGCTTCGGAGGATTGAAACGCACCAGGCACTAAAGA 954868 Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 |||| || ||||||| || |||| | ||| | || | ||||| ||| |||||| ||| Sbjct 954867 GTGCTGGACACTGTGCCAAGCCTAATGGACTGTACCCCGATGAGGCAGGAGACTTTGGGG 954808 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGT 5156 || | | |||||||||| |||| |||||| || || ||||||||||||||||| | Sbjct 954807 TAG--TAAGCCATGTTGGGCTTCAAGATCACCCACGGTGTCCTGATGGATGGAAAGGTCT 954750 Query 5157 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAG 5216 |||| || ||||||||| |||||| || || || |||||| ||||| ||||| Sbjct 954749 ATGACAT--CAGAGTGGGGCAGATGCC--CGCATGAGACTCTCCCAGGATAC---CAGAG 954697 Query 5217 TCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 | || | ||||| ||| |||||| || | | || ||||| | ||| |||||| Sbjct 954696 TTCCAGACTACATCACATGTGGTTCTAGGTTTCTGGGGACCAGTGGTCAGAAGAGAG 954640 >seq31194 Length=63334 Score = 154 bits (170), Expect = 1e-33 Identities = 197/265 (74%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 4976 ATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5035 |||||||| || ||||||| |||||||||| ||| || | | ||||| |||| || Sbjct 28281 ATGATGTGTAATTGATGCCAAAGAAAGCATAGAAGGGTTAATACAAACCGGAAACC-AAC 28339 Query 5036 AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGG 5095 | || ||||||| || | ||| |||| || || ||||| ||| ||||||| Sbjct 28340 A-TGTAAGATACTACATGGACTAAAAT-GGCTACAAGCTACTGAGAAAGCAAGCTTTTGG 28397 Query 5096 GCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTG 5155 |||||| |||||||||||||| |||| || ||||| ||| ||||||| |||| | Sbjct 28398 GCAGAGGCAAGCATGTTGGGC-TCAAGGTCTCCTACGTTGGACTGATGGGAA-AAAGATC 28455 Query 5156 TATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA 5215 |||| |||| | | |||| ||||| ||| ||||| |||||||| ||| || ||||| Sbjct 28456 TATGGCATCAGAAAATGGGTTGGATCCCACTGTGTGACAATCTCCCTAGACACTGACAGA 28515 Query 5216 GTCCCTTATCACATCCCATTTGGTT 5240 || ||||||||||| ||||||||| Sbjct 28516 GTTCCTTATCACATTTCATTTGGTT 28540 >seq3674 Length=1048365 Score = 129 bits (142), Expect = 5e-26 Identities = 172/234 (74%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 5021 GACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAG 5080 |||| ||||||||||||| | | ||| |||||||| |||||| | | ||||| || Sbjct 284202 GACCAAGAACCTAAGAGTG-TGGCTTCTGAGCTGAGTGCAATAGGTCGTGTTCTGCTCAG 284144 Query 5081 GAAGGTGACTTTTGGGCAGAGTC-AAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCT 5139 ||||| ||| | | ||||| | |||| |||| ||||| ||||| ||| | || Sbjct 284143 GAAGGAGAC-CTGGAGCAGAACCTAAGCGCGTTGAACCTCAGGATCACTCACTCGGGGCA 284085 Query 5140 GATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTC 5199 ||||| ||||||| ||||| ||| ||||| |||||||||| || ||||||| |||| Sbjct 284084 GATGGGCGGAAAGGCCTATGACGTCATAGAGTAGGCTGGATGCTGGCATGTGGGACTCTC 284025 Query 5200 CCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGG 5253 || || |||| |||||| || | || | |||||| ||||| ||||| ||| Sbjct 284024 CCAAGTTACC--CAGAGTTCCCTCCCAAGCCTCATTTGATTCACAGATGCTAGG 283973 >seq8834 Length=687082 Score = 114 bits (126), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 5069 CATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACC 5128 ||||||||||||||||| ||| | | ||| |||||| ||||| ||||| |||| Sbjct 431685 CATCCTGCTGAGGAAGGAGAC----GAGTAGATTCAAGCCTGTTGTTACTCAAGATCAGT 431630 Query 5129 TACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGT 5188 | | ||| |||||||| | ||| | ||||||||||||||||| || |||| | || | Sbjct 431629 TCCATTGAACTGATGGAAAGTAAGATCTATGATATCACAGAGTGAGCAGGATTCTGGCAT 431570 Query 5189 GTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTC 5241 | ||||||| | |||||||||||||| | |||||||| || |||| || Sbjct 431569 GAAGGAATCT-CTTGGATACCCACAGAGTTCGGCATCACATCTCACTTGGCTC 431518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39958037271496