Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2999 396 2e-106 seq8657 361 4e-96 seq2691 345 3e-91 seq17252 264 9e-67 seq341 246 2e-61 seq15762 149 5e-32 >seq2999 Length=1344349 Score = 396 bits (438), Expect = 2e-106 Identities = 251/272 (92%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 400884 ATGTGTAGCCGATGCCAAGGAAATCATAGAAGGTTTGAAATGGACCGGGAACCTAAGAGT 400943 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| Sbjct 400944 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCAGCTGTGGAAGGAGACTTTTGGGCA 401003 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || |||||| |||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct 401004 GAATCAAGCATGCTGGGCCTCAAGATCACCTGCTTTGCACTGATGGATGGAAAGGTCTAT 401063 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 401064 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACTCACAGAGTT 401123 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||||||||| |||||||| Sbjct 401124 CCCTATCACATCTCATTTGGTTCTCGGATGCC 401155 >seq8657 Length=133132 Score = 361 bits (400), Expect = 4e-96 Identities = 249/281 (89%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||| || ||||||||||| |||||||||||||||| |||| |||||||| Sbjct 72357 ATGTGTAGCCGATGTCAAGGAAAGCATAGAAGGTTTGAAATGGACCAGGAAGCTAAGAGT 72416 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 72417 GCCAAATACTGTGCTGAGTGTAATAGGCTGCATCCAGCTGAGGAAGGAGACTTTTGGGCA 72476 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||| ||||||| | |||||||||||||| || ||||||||| |||| ||| Sbjct 72477 GAGTCAAGCATGCTGGGCCTTAGGATCACCTACTTTGCACTAATGGATGGAGAGGTCTAT 72536 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||| ||||||||||| |||||||||||| |||||||| || ||||| Sbjct 72537 GACATCACAGAGTGGGTTGGATGCCAGCATGTGGGAATCTCTCCAGATACTCATAGAGTT 72596 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCCTTTCAGGCA 5274 || | |||||||||||||||||| |||||| ||||||| Sbjct 72597 CCCTATCACATCTCATTTGGTTCTCGGATG----TCAGGCA 72633 >seq2691 Length=106503 Score = 345 bits (382), Expect = 3e-91 Identities = 241/272 (89%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| || |||| ||||||||||||||| |||||||||||||||| || ||| Sbjct 3119 ATGTGTAGCTGAAGCCAAAGAAAGCATAGGAGGTGTGAAATGGACCGGGAAGCT--GAGC 3176 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||| | ||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 3177 GCCAGATGC-GTGCTGAATGCAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCA 3235 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||| |||||||||| |||||||||||||| || ||||||||| |||| ||| Sbjct 3236 GAGTCAAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTAATGGATGGAGAGGTCTAT 3295 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 3296 GACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCTCCAGATACCCATAGAGTT 3355 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||| ||||| |||||||| Sbjct 3356 CCCTATCACATCTCATTGGGTTCTCGGATGCC 3387 >seq17252 Length=301592 Score = 264 bits (292), Expect = 9e-67 Identities = 239/283 (84%), Gaps = 16/283 (6%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTG--AAATGGACCGGGAACCTAAGA 5051 ||||| ||||||||| | ||||||||| | |||||| |||||||| || ||||||||| Sbjct 14335 ATGTGTAGCCGATGCTAAGGAAAGCATGGAAGGTTTTGAAAATGGACTGG-AACCTAAGA 14277 Query 5052 GTGCCAGATACTGT-GCTGAGTGTAATAGGCTGCATCCTGCTG-AGGAAGGTG-ACTTTT 5108 ||| ||||| || ||||||||||||||||||||||| | || ||||||| | |||||| Sbjct 14276 GTGTCAGATCTCGTCGCTGAGTGTAATAGGCTGCATCCAGATGGAGGAAGGAGGACTTTT 14217 Query 5109 GGGCAGAGTCGAGCATGTTGGGCCTCAAA-ATCACCTACTTTGCG-CTGATGGATGGAAA 5166 || |||| || ||||| ||||||| ||| ||| |||||||||| |||||||||||||| Sbjct 14216 GG-CAGAATCAAGCATCCTGGGCCTTAAAGATC-CCTACTTTGCATCTGATGGATGGAAA 14159 Query 5167 GGTG-TATGATATCAC-AGAGTGGGCTGGA-TGCCAGCGTGTGGGAATCTCCCCAGATAC 5223 ||| ||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| Sbjct 14158 GGTCCTATGACATCACCAGAGTGGGCTGGAATGCCAGCGTGTGGGAATCTCTCCAGATAC 14099 Query 5224 CCACAGAGTCCCTTGTCACATCTCATTTGGTT-CACGGATGCC 5265 || ||||| || ||||||||||||||||| | |||||||| Sbjct 14098 TCATAGAGTTCC--ATCACATCTCATTTGGTTCCTCGGATGCC 14058 >seq341 Length=217529 Score = 246 bits (272), Expect = 2e-61 Identities = 153/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30583 TAGAAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 30524 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||| ||||||||||| ||||| |||||||| || |||||| |||||||||| || Sbjct 30523 GCTGCATCCAGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGCTGGGCCTCAAGAT 30464 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 30463 CACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 30420 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| |||||||| || ||||| || | || Sbjct 30330 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACTCATAGAGTTCCCTATC 30271 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| |||||||| Sbjct 30270 ACATCTCATTTGGTTCTCGGATGCC 30246 >seq15762 Length=99952 Score = 149 bits (164), Expect = 5e-32 Identities = 192/270 (71%), Gaps = 29/270 (11%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||| ||||||| |||||||||||||||||| |||| || ||||| || |||| Sbjct 59920 ATGTGGAGCCAATGCCAGAGAAAGCATAGGAGGTTTGCCATGGGCCAGGAACATAGGAGT 59861 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||| ||| ||||||| |||| ||| || | ||||||||||| | | |||||| Sbjct 59860 GCCAGACGTGGTGTTGAGTGTCATAGACTGTATGCGGCTGAGGAAGGAGGTGTCTGGGCA 59801 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| || || || |||| | || | ||||||||| ||| Sbjct 59800 GAGTCCAGCATGTTGGGGCTTAAGATGACCTTCGGTG-------GTATGGAAAGG-CTAT 59749 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | | || | |||||||||| | ||||| ||| |||||| Sbjct 59748 G---------------------GTCAACATGTGGGAATCCCTGCAGATTCCCTCAGAGTT 59710 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATG 5263 || | || |||| |||||||||| ||||| Sbjct 59709 CCCTATCTCATCCCATTTGGTTCTTGGATG 59680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40108851168876