Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq2999 432 3e-117 seq8657 379 2e-101 seq2691 367 1e-97 seq17252 288 8e-74 seq341 251 6e-63 seq15762 167 2e-37 >seq2999 Length=1344349 Score = 432 bits (478), Expect = 3e-117 Identities = 282/309 (91%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | ||||||||| ||||| ||||| |||||||||||||||| Sbjct 400870 CAATGAATACTATGATGTGTAGCCGATGCCAAGGAAATCATAGAAGGTTTGAAATGGACC 400929 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 400930 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCAGCTGTGGAAG 400989 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||||||||||| ||||||||| |||||||||| ||||||| |||||| ||||||| Sbjct 400990 GAGACTTTTGGGCAGAATCAAGCATGCTGGGCCTCAAGATCACCTGCTTTGCACTGATGG 401049 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 401050 ATGGAAAGGTCTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAG 401109 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 |||| |||||||| || ||||||||| |||||||||| ||||||||||| ||||| | | Sbjct 401110 ATACTCACAGAGTTCCCTATCACATCTCATTTGGTTCTCGGATGCCAGGAACCAGTGGTC 401169 Query 5265 AG-AGAGAG 5272 || |||||| Sbjct 401170 AGCAGAGAG 401178 >seq8657 Length=133132 Score = 379 bits (420), Expect = 2e-101 Identities = 260/292 (89%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||| ||||| |||||||| | |||||| || ||||||||||| |||||||||||||||| Sbjct 72344 CAAT-AATACTATGATGTGTAGCCGATGTCAAGGAAAGCATAGAAGGTTTGAAATGGACC 72402 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 72403 AGGAAGCTAAGAGTGCCAAATACTGTGCTGAGTGTAATAGGCTGCATCCAGCTGAGGAAG 72462 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||||||||||||||||||||| ||||||| | |||||||||||||| || |||| Sbjct 72463 GAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTTAGGATCACCTACTTTGCACTAATGG 72522 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||| |||| ||||| ||||||||||||| ||||||||||| |||||||||||| |||| Sbjct 72523 ATGGAGAGGTCTATGACATCACAGAGTGGGTTGGATGCCAGCATGTGGGAATCTCTCCAG 72582 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 |||| || ||||| || ||||||||| |||||||||| |||||| |||| || Sbjct 72583 ATACTCATAGAGTTCCCTATCACATCTCATTTGGTTCTCGGATGTCAGGCAC 72634 >seq2691 Length=106503 Score = 367 bits (406), Expect = 1e-97 Identities = 258/292 (88%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| |||||| |||||||| | | || |||| ||||||||||||||| ||||||||||| Sbjct 3105 CAACGAATACTATGATGTGTAGCTGAAGCCAAAGAAAGCATAGGAGGTGTGAAATGGACC 3164 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||| || ||| ||||||| | ||||||| || ||||||||||||||||||||||||| Sbjct 3165 GGGAAGCT--GAGCGCCAGATGC-GTGCTGAATGCAATAGGCTGCATCCTGCTGAGGAAG 3221 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||||||||||||||||||||| |||||||||| |||||||||||||| || |||| Sbjct 3222 GAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTAATGG 3281 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 3282 ATGGAGAGGTCTATGACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCTCCAG 3341 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 ||||||| ||||| || ||||||||| |||| ||||| ||||||||||| || Sbjct 3342 ATACCCATAGAGTTCCCTATCACATCTCATTGGGTTCTCGGATGCCAGGCAC 3393 >seq17252 Length=301592 Score = 288 bits (318), Expect = 8e-74 Identities = 259/306 (85%), Gaps = 17/306 (6%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTG--AAATGGA 5022 |||||||||| | |||||| | ||||||| | ||||||||| | |||||| ||||||| Sbjct 14348 CAATGAATACTA-GATGTGTAGCCGATGCTAAGGAAAGCATGGAAGGTTTTGAAAATGGA 14290 Query 5023 CCGGGAACCTAAGAGTGCCAGATACTGT-GCTGAGTGTAATAGGCTGCATCCTGCTG-AG 5080 | || |||||||||||| ||||| || ||||||||||||||||||||||| | || || Sbjct 14289 CTGG-AACCTAAGAGTGTCAGATCTCGTCGCTGAGTGTAATAGGCTGCATCCAGATGGAG 14231 Query 5081 GAAGGTG-ACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAA-ATCACCTACTTTGCG- 5137 ||||| | |||||||| |||| |||||||| ||||||| ||| ||| |||||||||| Sbjct 14230 GAAGGAGGACTTTTGG-CAGAATCAAGCATCCTGGGCCTTAAAGATC-CCTACTTTGCAT 14173 Query 5138 CTGATGGATGGAAAGGTG-TATGATATCAC-AGAGTGGGCTGGA-TGCCAGCGTGTGGGA 5194 ||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 14172 CTGATGGATGGAAAGGTCCTATGACATCACCAGAGTGGGCTGGAATGCCAGCGTGTGGGA 14113 Query 5195 ATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTT-CACGGATGCCAGG 5253 ||||| |||||||| || ||||| || |||||||| ||||||||| | ||||||||||| Sbjct 14112 ATCTCTCCAGATACTCATAGAGTTCC--ATCACATCTCATTTGGTTCCTCGGATGCCAGG 14055 Query 5254 TACCAG 5259 ||||| Sbjct 14054 AACCAG 14049 >seq341 Length=217529 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30583 TAGAAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 30524 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||| ||||||||||| ||||| |||||||| ||||||||| |||||||||| || Sbjct 30523 GCTGCATCCAGCTGAGGAAGGAGACTTCTGGGCAGAATCAAGCATGCTGGGCCTCAAGAT 30464 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 30463 CACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 30420 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| |||||||| || ||||| || |||| Sbjct 30330 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACTCATAGAGTTCCCTATC 30271 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||||||||| ||||| Sbjct 30270 ACATCTCATTTGGTTCTCGGATGCCAGGAACCAG 30237 >seq15762 Length=99952 Score = 167 bits (184), Expect = 2e-37 Identities = 205/285 (72%), Gaps = 29/285 (10%) Strand=Plus/Minus Query 4964 TCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGAC 5023 ||||||| ||| | |||||| | || ||||||| |||||||||||||||||| |||| | Sbjct 59935 TCAATGAGTACCACGATGTGGAGCCAATGCCAGAGAAAGCATAGGAGGTTTGCCATGGGC 59876 Query 5024 CGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAA 5083 | ||||| || |||||||||| ||| ||||||| |||| ||| || | ||||||||| Sbjct 59875 CAGGAACATAGGAGTGCCAGACGTGGTGTTGAGTGTCATAGACTGTATGCGGCTGAGGAA 59816 Query 5084 GGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 || | | ||||||||||| ||||||||||| || || || |||| | || | Sbjct 59815 GGAGGTGTCTGGGCAGAGTCCAGCATGTTGGGGCTTAAGATGACCTTCGGTG-------G 59763 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 ||||||||| |||| | || | |||||||||| | || Sbjct 59762 TATGGAAAGG-CTATG---------------------GTCAACATGTGGGAATCCCTGCA 59725 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATG 5248 ||| ||| |||||| || |||| ||||||||||||||| ||||| Sbjct 59724 GATTCCCTCAGAGTTCCCTATCTCATCCCATTTGGTTCTTGGATG 59680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201629080968