Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq18024 114 7e-23 seq10580 114 7e-23 seq6961 114 7e-23 seq20301 105 4e-20 seq17664 98.7 6e-18 seq16198 87.8 1e-14 >seq18024 Length=276033 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 270806 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGACGCGTGCGCTCGTGCTCCACCTCC 270747 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 270746 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 270720 >seq10580 Length=26653 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 14149 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGACGCGTGCGCTCGTGCTCCACCTCC 14208 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 14209 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 14235 >seq6961 Length=175213 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 167945 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGACGCGTGCGCTCGTGCTCCACCTCC 168004 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 168005 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 168031 >seq20301 Length=17530 Score = 105 bits (116), Expect = 4e-20 Identities = 82/91 (90%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| Sbjct 1673 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGACGCGTGCGCTCGTGCTCCA-CTCC 1615 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1614 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1588 >seq17664 Length=22148 Score = 98.7 bits (108), Expect = 6e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct 7316 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGATGCGTGCGCTCGTGCTCCACCTCC 7257 Query 897 CCGACGCGG 905 | | ||||| Sbjct 7256 CAGGCGCGG 7248 >seq16198 Length=237580 Score = 87.8 bits (96), Expect = 1e-14 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| Sbjct 19964 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGATGTGTGCACTCGTGCTCCACCTCC 19905 Query 897 C 897 | Sbjct 19904 C 19904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860175826186