Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1000 109 4e-20 >seq1000 Length=59189873 Score = 109 bits (120), Expect = 4e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| || ||||||||||||||||| |||||||||| ||| || | || Sbjct 42312919 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42312978 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 42312979 ACATCTCATTTGGCTCTCGGATCCC 42313003 Score = 105 bits (116), Expect = 5e-19 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 5106 TTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAA 5165 ||||||||||||| ||||||||||| ||||| || ||||||||||| || |||||||||| Sbjct 42312459 TTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGGATGGAA 42312518 Query 5166 AGGTGTATGATATCACAG 5183 |||| ||||| ||||||| Sbjct 42312519 AGGTCTATGACATCACAG 42312536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116986879508