Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq1000 109 4e-20
>seq1000
Length=59189873
Score = 109 bits (120), Expect = 4e-20
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||||||||||||||| || ||||||||||||||||| |||||||||| ||| || | ||
Sbjct 42312919 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42312978
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
||||||||||||| || ||||| ||
Sbjct 42312979 ACATCTCATTTGGCTCTCGGATCCC 42313003
Score = 105 bits (116), Expect = 5e-19
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 5106 TTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAA 5165
||||||||||||| ||||||||||| ||||| || ||||||||||| || ||||||||||
Sbjct 42312459 TTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGGATGGAA 42312518
Query 5166 AGGTGTATGATATCACAG 5183
|||| ||||| |||||||
Sbjct 42312519 AGGTCTATGACATCACAG 42312536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40116986879508
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |