Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq3133 369 3e-98
seq3134 251 6e-63
>seq3133
Length=50759066
Score = 369 bits (408), Expect = 3e-98
Identities = 245/272 (90%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 26061763 ATGTGTAGTCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 26061822
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 26061823 GCCAGATACTGCGCTGAGTGTAATAGGCTGCATCCTGCTGAAGAAGGAGAATTTTGGGCA 26061882
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||||||||||| ||||| || ||||||||||| || |||||||||||||| |||
Sbjct 26061883 GAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGGATGGAAAGGTCTAT 26061942
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||
Sbjct 26061943 GATATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGCT 26062002
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | ||||||||||||||| || | ||| ||
Sbjct 26062003 CCCTATCACATCTCATTTGGCTCTCAGATCCC 26062034
>seq3134
Length=59225736
Score = 251 bits (278), Expect = 6e-63
Identities = 154/164 (94%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42339936 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 42339995
Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139
||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 42339996 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 42340055
Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 42340056 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 42340099
Score = 109 bits (120), Expect = 4e-20
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||||||||||||||| || ||||||||||||||||| |||||||||| ||| || | ||
Sbjct 42340482 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42340541
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
||||||||||||| || ||||| ||
Sbjct 42340542 ACATCTCATTTGGCTCTCGGATCCC 42340566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40116981012192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |