Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq3133 369 3e-98 seq3134 251 6e-63 >seq3133 Length=50759066 Score = 369 bits (408), Expect = 3e-98 Identities = 245/272 (90%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 26061763 ATGTGTAGTCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 26061822 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct 26061823 GCCAGATACTGCGCTGAGTGTAATAGGCTGCATCCTGCTGAAGAAGGAGAATTTTGGGCA 26061882 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| || ||||||||||| || |||||||||||||| ||| Sbjct 26061883 GAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGGATGGAAAGGTCTAT 26061942 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||||||||||||||| || ||||||||||||||||| |||||||||| || Sbjct 26061943 GATATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGCT 26062002 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||| || | ||| || Sbjct 26062003 CCCTATCACATCTCATTTGGCTCTCAGATCCC 26062034 >seq3134 Length=59225736 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42339936 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 42339995 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 42339996 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 42340055 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 42340056 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 42340099 Score = 109 bits (120), Expect = 4e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| || ||||||||||||||||| |||||||||| ||| || | || Sbjct 42340482 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42340541 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 42340542 ACATCTCATTTGGCTCTCGGATCCC 42340566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116981012192