Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq3133 403 1e-108
seq3134 255 5e-64
>seq3133
Length=50759066
Score = 403 bits (446), Expect = 1e-108
Identities = 275/309 (89%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024
|||||||||| |||||||| | |||||||| || |||||||||||||||||||||||||
Sbjct 26061749 CAATGAATACTATGATGTGTAGTCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACC 26061808
Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 26061809 GGGAACCTAAGAGTGCCAGATACTGCGCTGAGTGTAATAGGCTGCATCCTGCTGAAGAAG 26061868
Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144
| || |||||||||||||||||||||||||| ||||| || ||||||||||| || ||||
Sbjct 26061869 GAGAATTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGG 26061928
Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204
|||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 26061929 ATGGAAAGGTCTATGATATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTG 26061988
Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG--- 5261
||||||||| || || ||||||||| ||||||| || | ||| ||||| ||||| |
Sbjct 26061989 ATACCCACAAAGCTCCCTATCACATCTCATTTGGCTCTCAGATCCCAGGCACCAGTGGTC 26062048
Query 5262 ACCAGAGAG 5270
||||||||
Sbjct 26062049 GCCAGAGAG 26062057
>seq3134
Length=59225736
Score = 255 bits (282), Expect = 5e-64
Identities = 155/164 (95%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42339936 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 42339995
Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 42339996 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 42340055
Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 42340056 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 42340099
Score = 120 bits (132), Expect = 2e-23
Identities = 83/94 (88%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
|||||||||||||||| || ||||||||||||||||| |||||||||| ||| || ||||
Sbjct 42340482 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42340541
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| ||||||| || ||||| ||||| |||||
Sbjct 42340542 ACATCTCATTTGGCTCTCGGATCCCAGGCACCAG 42340575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40209777729856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |