Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq3133 403 1e-108 seq3134 255 5e-64 >seq3133 Length=50759066 Score = 403 bits (446), Expect = 1e-108 Identities = 275/309 (89%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | |||||||| || ||||||||||||||||||||||||| Sbjct 26061749 CAATGAATACTATGATGTGTAGTCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACC 26061808 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 26061809 GGGAACCTAAGAGTGCCAGATACTGCGCTGAGTGTAATAGGCTGCATCCTGCTGAAGAAG 26061868 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | || |||||||||||||||||||||||||| ||||| || ||||||||||| || |||| Sbjct 26061869 GAGAATTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATTACCTACTTTGCACTAATGG 26061928 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 26061929 ATGGAAAGGTCTATGATATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTG 26061988 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG--- 5261 ||||||||| || || ||||||||| ||||||| || | ||| ||||| ||||| | Sbjct 26061989 ATACCCACAAAGCTCCCTATCACATCTCATTTGGCTCTCAGATCCCAGGCACCAGTGGTC 26062048 Query 5262 ACCAGAGAG 5270 |||||||| Sbjct 26062049 GCCAGAGAG 26062057 >seq3134 Length=59225736 Score = 255 bits (282), Expect = 5e-64 Identities = 155/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42339936 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 42339995 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 42339996 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 42340055 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 42340056 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 42340099 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| || ||||||||||||||||| |||||||||| ||| || |||| Sbjct 42340482 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCCCCTGATACCCACAAAGTTCCCTATC 42340541 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| ||||||| || ||||| ||||| ||||| Sbjct 42340542 ACATCTCATTTGGCTCTCGGATCCCAGGCACCAG 42340575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209777729856