Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2216 114 7e-23 seq3141 96.9 2e-17 >seq2216 Length=34530 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 5115 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCCTGCTCCACCTCC 5174 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 5175 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 5201 >seq3141 Length=78381119 Score = 96.9 bits (106), Expect = 2e-17 Identities = 68/75 (91%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| Sbjct 70968270 CTGCCCAGGTATAGTTCACCATCTTT-GGGTCCTAACACATGCGCTCCTGCTCCACCTCC 70968328 Query 897 CCGACGCGGTCGGGT 911 | | ||||| ||||| Sbjct 70968329 CAGGCGCGG-CGGGT 70968342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860707245712