Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq2216 114 7e-23
seq3141 96.9 2e-17
>seq2216
Length=34530
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 5115 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCCTGCTCCACCTCC 5174
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 5175 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 5201
>seq3141
Length=78381119
Score = 96.9 bits (106), Expect = 2e-17
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 70968270 CTGCCCAGGTATAGTTCACCATCTTT-GGGTCCTAACACATGCGCTCCTGCTCCACCTCC 70968328
Query 897 CCGACGCGGTCGGGT 911
| | ||||| |||||
Sbjct 70968329 CAGGCGCGG-CGGGT 70968342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2860707245712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |