Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq57 233 2e-57 >seq57 Length=15833023 Score = 233 bits (258), Expect = 2e-57 Identities = 150/164 (91%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 3457506 TAGGAGGTTTGAGATGGACCGTGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAG 3457447 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 3457446 GCTGCATCCCGCTCAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 3457387 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 3457386 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 3457343 Score = 104 bits (114), Expect = 2e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| || |||||| |||||||||| |||||||||| ||| || | || Sbjct 3456856 CAGAGTGGGCTGGATGTCAACGTGTGAGAATCTCCCCTGATACCCACAAAGTTCCCTATC 3456797 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 3456796 ACATCTCATTTGGCTCTCGGATCCC 3456772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117118668452