Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq57 237 1e-58 >seq57 Length=15833023 Score = 237 bits (262), Expect = 1e-58 Identities = 151/164 (92%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 3457506 TAGGAGGTTTGAGATGGACCGTGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAG 3457447 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 3457446 GCTGCATCCCGCTCAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 3457387 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 3457386 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 3457343 Score = 111 bits (122), Expect = 1e-20 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| || |||||| |||||||||| |||||||||| ||| || |||| Sbjct 3456856 CAGAGTGGGCTGGATGTCAACGTGTGAGAATCTCCCCTGATACCCACAAAGTTCCCTATC 3456797 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| ||||||| || ||||| || || ||||| Sbjct 3456796 ACATCTCATTTGGCTCTCGGATCCCGGGCACCAG 3456763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209915704536