Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1162 360 2e-95 seq638 259 4e-65 seq2055 223 3e-54 seq322 161 8e-36 seq644 141 7e-30 seq6623 111 1e-20 seq7 102 7e-18 >seq1162 Length=523406 Score = 360 bits (398), Expect = 2e-95 Identities = 244/271 (90%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 311257 ATGTGCAGCCGATGCCAAGGAAAGCATAGGAGGTTTGAAGTGGACCGGGAACCTAAGAGT 311316 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||||| Sbjct 311317 GCCAGATATTGTGCGGAGTGTAACAGGCTGCATCCTGCTGAGGAGGGAGACTTTTGGGCA 311376 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||| || Sbjct 311377 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCCCTGATGAATGGAAAGGTCTA- 311435 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGAT----ACCCACAG 5229 |||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 311436 CATAT--CAGAATGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACCCACAG 311493 Query 5230 AGTCCCTTGTCACATCTCATTTGGTTCACGG 5260 ||| |||| || |||||||||||||| ||| Sbjct 311494 AGTTCCTTACCATATCTCATTTGGTTCTCGG 311524 >seq638 Length=1004954 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 846937 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 846996 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 846997 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 847056 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 847057 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 847099 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| | Sbjct 847183 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCATAGAGTTCCTTACC 847242 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 847243 ACATCTCATTTGGTTCTCGG 847262 >seq2055 Length=226681 Score = 223 bits (246), Expect = 3e-54 Identities = 212/267 (79%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || |||||| | |||||| |||||| ||||| ||| || | |||||||||| Sbjct 131052 ATGTGTAGTCGATGCAAAGGAAAGTGTAGGAGATTTGAGATGAACATG-AACCTAAGAGA 130994 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCC----TGCTGAGGAAGGTGACTTTTG 5109 |||||||||||||| |||||||| |||| ||| | ||| |||||||| ||||| | Sbjct 130993 ACCAGATACTGTGCTAAGTGTAATGGGCTACATACATACTGCCGAGGAAGGAGACTT--G 130936 Query 5110 GGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 | |||| || | ||||||||||||||| |||| || || | |||||| |||||||| | Sbjct 130935 GACAGATTCAAACATGTTGGGCCTCAAGATCAGTGACATTACACTGATGAATGGAAAGAT 130876 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 ||||| |||||||||||||| |||| ||||| | |||||||| || |||||| |||| Sbjct 130875 CTATGACATCACAGAGTGGGCAGGATTCCAGCATATGGGAATC-ACCTGGATACCTACAG 130817 Query 5230 AGTCCCTTGTCACATCTCATTTGGTTC 5256 ||| || | |||||||||| |||| || Sbjct 130816 AGTTCCATATCACATCTCAGTTGGCTC 130790 >seq322 Length=1675245 Score = 161 bits (178), Expect = 8e-36 Identities = 193/257 (75%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGA 5059 ||| |||| || ||||||| | |||||||||| || || ||| || | |||| | || Sbjct 397645 AGCTGATGTCAAGGAAAGCTTCAGAGGTTTGAATTGCACTGGGCACTTGAGAG--CTGGA 397588 Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCG 5119 ||||||| || ||||||| ||||| ||||| |||||||| |||||| | | | Sbjct 397587 CACTGTGCCAAGGGTAATAGACTGCACCCTGCGGAGGAAGGAGACTTTGGAGTAACAA-- 397530 Query 5120 AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATC 5179 ||||||||||||||||| ||||| | ||||| |||||| ||| ||| || ||||| || Sbjct 397529 AGCATGTTGGGCCTCAAGATCACTTCCTTTGTACTGATGAATGAAAAAGTCTATGACAT- 397471 Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 ||||||||| ||||||||| | ||||||||| ||| ||| | |||| || | | Sbjct 397470 -CAGAGTGGGAGAGATGCCAGC--ATAAGAATCTCCCAAGACACC--CGGAGTTCCATAT 397416 Query 5240 CACATCTCATTTGGTTC 5256 || || |||||||||| Sbjct 397415 CATATGACATTTGGTTC 397399 >seq644 Length=996286 Score = 141 bits (156), Expect = 7e-30 Identities = 176/237 (74%), Gaps = 17/237 (7%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||| || || | || | ||| ||||||||| | ||| |||||| ||||||| || Sbjct 931301 TAGGAGATTGGAGGTAGATCAGGAGCCTAAGAGTTCTAGACACTGTG---AGTGTAACAG 931357 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 | ||||||||||||||||| ||| |||||| || | ||||||| ||| |||| || Sbjct 931358 ATTACATCCTGCTGAGGAAGGAGAC--TTGGGCTGAACCAAGCATGTCAGGCTTCAAGAT 931415 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCA 5199 || || ||| ||||||||||| | ||||| || |||||||||||| || ||| Sbjct 931416 CA--------GCACTGGTGGATGGAAAGAT-TATGACAT--CAGAGTGGGCTGAATTCCA 931464 Query 5200 GCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 || |||||| |||| || |||||||| | || || ||| | |||| ||||||| Sbjct 931465 GCATGTGGGCATCT-CCTGGATACCCATGGGGTTCCACATCATAGCTCAGTTGGTTC 931520 >seq6623 Length=15899 Score = 111 bits (122), Expect = 1e-20 Identities = 84/98 (86%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 5159 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5218 ||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||| ||| Sbjct 7102 GATGGAAAGGTCTATGATATCACAGAGTGGGAGGGATGTCAGAATGTGGGAATCTCTCCA 7043 Query 5219 GATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 |||||| |||||| | || ||||||||||||| ||| Sbjct 7042 GATACC--CAGAGTTCATTACCACATCTCATTTGTTTC 7007 >seq7 Length=6017914 Score = 102 bits (112), Expect = 7e-18 Identities = 159/221 (72%), Gaps = 15/221 (7%) Strand=Plus/Plus Query 5024 AGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTG 5083 ||| ||| ||||||| ||| || ||| | |||| ||||||||||||| | |||||| Sbjct 3166968 AGGCTTGGGATGGACCAAGAAGCTCAGAACAC-AGATGCTGTGCTGAGTGTCACAGGCTG 3167026 Query 5084 CATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACC 5143 | | ||||| | | || ||| | ||||||| || | | |||||| ||| | Sbjct 3167027 CGTTCTGCTCAAAAGGGAGACCTG-GGGCAGAATCAAAGCT------CCTCAAGATCGC- 3167078 Query 5144 TACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGT 5203 | || |||| |||||||||| | |||| ||||||||| |||||||||||||| Sbjct 3167079 ---TCGGCATGGATGCATGGAAAGGTCTGTGATGCAACAGAGTGG-CTGGATGCCAGCGT 3167134 Query 5204 GTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG-TCACA 5243 | ||||| ||||| || |||||| || ||||| | ||||| Sbjct 3167135 GCGGGAACCTCCCAAGTTACCCAGAG-TTCCCTGGTTCACA 3167174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40069136209536