Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001608.3 Length=19111 Score E Sequences producing significant alignments: (Bits) Value seq729 102 1e-17 >seq729 Length=875148 Score = 102 bits (112), Expect = 1e-17 Identities = 312/473 (66%), Gaps = 27/473 (6%) Strand=Plus/Plus Query 619 TTGGCTTACCACAGGCCACATGAAAGTAATTTTCGGGATTTTGAGGTCCAGCTTCATTTT 678 |||| | ||| | ||| |||| | || ||| || | |||| ||||||| | ||| Sbjct 49163 TTGGATCACCTCTGGCTTTATGATTATTATCTTCAGGTTGATGAGAGCCAGCTTTACTTT 49222 Query 679 AAAGTTTGTGTTGATTCATCAAGGAGTAAATTTGGTGACAGGTCATGATGCCTATGACAG 738 || ||| ||| ||| || |||| | ||||| |||| | | || ||||| Sbjct 49223 CAAATTTATGTAGATACACCAAGTGATCAATTTA---ACAG----TCAAGC--ATGACCC 49273 Query 739 TATCATTAGTAATTCAGTAGGTCAAACTAGATTCTCAGGACTTCTTATCGTGAAAACAGT 798 || || | || ||||| | || | ||||||||||| || | || | || |||| Sbjct 49274 TA--ATGACCAACTCAGTGACTAAAGCCAGATTCTCAGGGCTCTTGATTGC-AAGGCAGT 49330 Query 799 TCTCGAGTTCATCTTGCAAAAAACTGATTCAGGGGTGACACTACATCCTTTGGTGCGGAC 858 | | || ||| ||||| |||| || || | || || ||||| |||| |||| Sbjct 49331 TTTGGATCACATTTTGCACAAAAGAGACCGAG---TTACTCTCCATCCACTGGTAAGGAC 49387 Query 859 CTCCAAAGTAAAAAATGAAGTTGCTAGTTTCAAGCAGGCGTTGAGCAACCTAGCCCGACA 918 | | ||| | | ||||||| || ||||||| |||| |||| ||| Sbjct 49388 CATTAGAGTTAGATCAGAAGTTGAAAGCTTCAAGCC-------AGCA--CTAGAAGGACT 49438 Query 919 TGG-GGA-ATACGCACCATTTGCACGGGTTCTGAATTTATCAGGGATTAACAACCTCGAA 976 || ||| || | || ||||||| | | || ||||| || ||| | || || | || Sbjct 49439 TGCTGGACATTTGTTCCCTTTGCACAGATCCTAAATTTGTCTGGGGTCAATAATTTAGAG 49498 Query 977 CATGGACTCTATCCTCAGCTTTCAGCAATTGCGCTGGGTGTGGCAACAGCACACGGCAGT 1036 | ||| || | ||| ||||| |||| ||||| || || || || ||||||||||| | Sbjct 49499 CTTGGTCTGT-TCCCCAGCTGTCAGTGATTGCTCTAGGAGTAGCCACAGCACACGGTTGC 49557 Query 1037 ACATTGGCTGGTGTCAATGTTGGCGAACAATATCAACAACTACGAGAGGCGGC 1089 || |||| ||| ||| |||||| || |||||||||||||| |||| || || Sbjct 49558 ACCTTGGTTGGCATCACTGTTGGAGAGCAATATCAACAACTGAGAGAAGCTGC 49610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60959767285824