Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002549.1 Length=18959 Score E Sequences producing significant alignments: (Bits) Value seq729 141 1e-29 >seq729 Length=875148 Score = 141 bits (156), Expect = 1e-29 Identities = 265/379 (70%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 1169 AATTCAGTGGCTCAAGCTCGTTTTTCAGGCTTATTGATTGTCAAAACAGTACTTGATCAT 1228 || |||||| || |||| | || ||||| | ||||||| ||| |||| | ||||| Sbjct 49282 AACTCAGTGACTAAAGCCAGATTCTCAGGGCTCTTGATTG-CAAGGCAGTTTTGGATCAC 49340 Query 1229 ATCCTACAAAAGACAGAACGAGGAGTTCGTCTCCATCCTCTTGCAAGGACCGCCA-AGGT 1287 || | || || | ||| |||| || ||||||||| || | ||||||| | || | Sbjct 49341 ATTTTGCACAAAAGAGACCGAG---TTACTCTCCATCCACTGGTAAGGACCATTAGAGTT 49397 Query 1288 AAAAAATGAGGTGAACTCCTTTAAGGCTGCACTCAGCTCCCTGGCCAAGCATGGAGAGTA 1347 | | | || |||| | || ||| | ||||| || || | || |||| | | Sbjct 49398 AGATCAGAAGTTGAAAGC-TTCAAGCCAGCACT-AGAA----GGACTTGC-TGGACATT- 49449 Query 1348 TGCTCCTTTCGCCCGACTTTTGAACCTTTCTGGAGTAAATAATCTTGAGCATGGTCTTTT 1407 || ||| || || | | | || | ||||| || |||||| | |||| |||||| || Sbjct 49450 TGTTCCCTTTGCACAGATCCTAAATTTGTCTGGGGTCAATAATTTAGAGCTTGGTCTGTT 49509 Query 1408 CCCTCAACTATCGGCAATTGCACTCGGAGTCGCCACAGCACACGGGAGTACCCTCGCAGG 1467 ||| || || || | ||||| || ||||| |||||||||||||| | ||| | | || Sbjct 49510 CCC-CAGCTGTCAGTGATTGCTCTAGGAGTAGCCACAGCACACGGTTGCACCTTGGTTGG 49568 Query 1468 AGTAAATGTTGGAGAACAGTATCAACAACTCAGAGAGGCTGCCACTGAGGCTGAGAAGCA 1527 | | ||||||||| || ||||||||||| ||||| ||||||||||| || |||||| Sbjct 49569 CATCACTGTTGGAGAGCAATATCAACAACTGAGAGAAGCTGCCACTGAAGCAGAGAAGAG 49628 Query 1528 ACTCCAACAATATGCAGAG 1546 ||| ||| | ||||| ||| Sbjct 49629 ACTACAAGAGTATGCTGAG 49647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60473981156672