Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1162 379 2e-101 seq638 262 3e-66 seq2055 241 1e-59 seq322 181 9e-42 seq644 147 2e-31 seq6623 113 4e-21 seq7 105 5e-19 >seq1162 Length=523406 Score = 379 bits (420), Expect = 2e-101 Identities = 265/299 (89%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||| Sbjct 311243 CAATGAATACTCTGATGTGCAGCCGATGCCAAGGAAAGCATAGGAGGTTTGAAGTGGACC 311302 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| | Sbjct 311303 GGGAACCTAAGAGTGCCAGATATTGTGCGGAGTGTAACAGGCTGCATCCTGCTGAGGAGG 311362 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 311363 GAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCCCTGATGA 311422 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| || |||| |||| ||||||||||||||||||||||||||||| |||| Sbjct 311423 ATGGAAAGGTCTA-CATAT--CAGAATGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAG 311479 Query 5205 AT----ACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 || ||||||||||| ||||| || ||| |||||||||| ||| | || || || || Sbjct 311480 ATACCCACCCACAGAGTTCCTTACCATATCTCATTTGGTTCTCGGGTACCGGGCACTAG 311538 >seq638 Length=1004954 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 846937 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 846996 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct 846997 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 847056 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 847057 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 847099 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 847183 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCATAGAGTTCCTTACC 847242 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | || || || || Sbjct 847243 ACATCTCATTTGGTTCTCGGGTACCGGGCACTAG 847276 >seq2055 Length=226681 Score = 241 bits (266), Expect = 1e-59 Identities = 233/294 (79%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 ||||||||| ||||||| | |||||| | |||||| |||||| ||||| ||| || Sbjct 131065 AATGAATACTGTGATGTGTAGTCGATGCAAAGGAAAGTGTAGGAGATTTGAGATGAACAT 131006 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCC----TGCTGAGG 5081 | |||||||||| |||||||||||||| |||||||| |||| ||| | ||| |||| Sbjct 131005 G-AACCTAAGAGAACCAGATACTGTGCTAAGTGTAATGGGCTACATACATACTGCCGAGG 130947 Query 5082 AAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGA 5141 |||| ||||| || |||| |||| ||||||||||||||| |||| || || | |||| Sbjct 130946 AAGGAGACTT--GGACAGATTCAAACATGTTGGGCCTCAAGATCAGTGACATTACACTGA 130889 Query 5142 TGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCC 5201 || |||||||| | ||||| |||||||||||||| |||| ||||| | |||||||| || Sbjct 130888 TGAATGGAAAGATCTATGACATCACAGAGTGGGCAGGATTCCAGCATATGGGAATC-ACC 130830 Query 5202 CAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTA 5255 |||||| ||||||| || ||||||||| || |||| || || | ||||||| Sbjct 130829 TGGATACCTACAGAGTTCCATATCACATCTCAGTTGGCTCTTGG-TACCAGGTA 130777 >seq322 Length=1675245 Score = 181 bits (200), Expect = 9e-42 Identities = 215/285 (75%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 4989 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5048 |||| || ||||||| | |||||||||| || || ||| || | |||| | || ||| Sbjct 397641 GATGTCAAGGAAAGCTTCAGAGGTTTGAATTGCACTGGGCACTTGAGAG--CTGGACACT 397584 Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 |||| || ||||||| ||||| ||||| |||||||| |||||| | | | ||||| Sbjct 397583 GTGCCAAGGGTAATAGACTGCACCCTGCGGAGGAAGGAGACTTTGGAGTAACA--AAGCA 397526 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||| ||||| | ||||| |||||| ||| ||| || ||||| || ||| Sbjct 397525 TGTTGGGCCTCAAGATCACTTCCTTTGTACTGATGAATGAAAAAGTCTATGACAT--CAG 397468 Query 5169 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACA 5228 |||||| ||||||||| | ||||||||| ||| ||| | |||| || ||||| | Sbjct 397467 AGTGGGAGAGATGCCAGC--ATAAGAATCTCCCAAGACACC--CGGAGTTCCATATCATA 397412 Query 5229 TCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 | |||||||||| | | ||||||||||| | ||| |||||| Sbjct 397411 TGACATTTGGTTCTGAGTTACCAGGTACCAGTGGTCAGAAGAGAG 397367 >seq644 Length=996286 Score = 147 bits (162), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 17/250 (7%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||| || || | || | ||| ||||||||| | ||| |||||| ||||||| || Sbjct 931301 TAGGAGATTGGAGGTAGATCAGGAGCCTAAGAGTTCTAGACACTGTG---AGTGTAACAG 931357 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 | ||||||||||||||||| ||| |||||| || ||||||||| ||| |||| || Sbjct 931358 ATTACATCCTGCTGAGGAAGGAGAC--TTGGGCTGAACCAAGCATGTCAGGCTTCAAGAT 931415 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCA 5184 || || ||| ||||||||||| | ||||| || |||||||||||| || ||| Sbjct 931416 CA--------GCACTGGTGGATGGAAAGAT-TATGACAT--CAGAGTGGGCTGAATTCCA 931464 Query 5185 GCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACG 5244 || |||||| |||| || |||||||| | || || |||| | | || ||||||| | Sbjct 931465 GCATGTGGGCATCT-CCTGGATACCCATGGGGTTCCACATCATAGCTCAGTTGGTTCTTG 931523 Query 5245 GATGCCAGGT 5254 | | || ||| Sbjct 931524 GGTACCCGGT 931533 >seq6623 Length=15899 Score = 113 bits (124), Expect = 4e-21 Identities = 95/116 (82%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 ||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||| ||| Sbjct 7102 GATGGAAAGGTCTATGATATCACAGAGTGGGAGGGATGTCAGAATGTGGGAATCTCTCCA 7043 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||| | ||| |||||| |||||| ||| | | | || || || || Sbjct 7042 GATACC--CAGAGTTCATTACCACATCTCATTTGTTTCTCAGGTACCGGGCACTAG 6989 >seq7 Length=6017914 Score = 105 bits (116), Expect = 5e-19 Identities = 180/254 (71%), Gaps = 18/254 (7%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCAT---AGG-AGGTTTGAAATG 5020 || |||| |||| |||| | | | | ||||| ||||| | || ||| ||| ||| Sbjct 3166921 CAGTGAAGACGACGATGGGTAGCGG-TGCCAAAGAAAGGCTGACAGACAGGCTTGGGATG 3166979 Query 5021 GACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAG 5080 |||| ||| || ||| | |||| ||||||||||||| | ||||||| | ||||| | Sbjct 3166980 GACCAAGAAGCTCAGAACAC-AGATGCTGTGCTGAGTGTCACAGGCTGCGTTCTGCTCAA 3167038 Query 5081 GAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 | || ||| | ||||||| |||| | |||||| ||| | | || | Sbjct 3167039 AAGGGAGACCTG-GGGCAGAATCAAAGCT------CCTCAAGATCGC----TCGGCATGG 3167087 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 ||| |||||||||| | |||| ||||||||| ||||||||||||||| ||||| |||| Sbjct 3167088 ATGCATGGAAAGGTCTGTGATGCAACAGAGTGG-CTGGATGCCAGCGTGCGGGAACCTCC 3167146 Query 5201 CCAGATACCCACAG 5214 | || |||||| || Sbjct 3167147 CAAGTTACCCAGAG 3167160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40161822254848