Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_004161.1 Length=18891 Score E Sequences producing significant alignments: (Bits) Value seq729 132 6e-27 >seq729 Length=875148 Score = 132 bits (146), Expect = 6e-27 Identities = 138/180 (77%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 1361 CTCAATCTCTCGGGAGTTAACAACCTAGAACATGGTCTCTACCCACAGTTATCAGCAATT 1420 || ||| | || || || || || |||| | |||||| | ||| ||| | |||| ||| Sbjct 49469 CTAAATTTGTCTGGGGTCAATAATTTAGAGCTTGGTCTGTTCCC-CAGCTGTCAGTGATT 49527 Query 1421 GCTCTTGGAGTTGCCACAGCACATGGTAGCACCCTTGCAGGAGTTAATGTTGGTGAGCAG 1480 ||||| ||||| ||||||||||| ||| ||||| | | || | | |||||| ||||| Sbjct 49528 GCTCTAGGAGTAGCCACAGCACACGGTTGCACCTTGGTTGGCATCACTGTTGGAGAGCAA 49587 Query 1481 TATCAGCAGCTTAGAGAGGCTGCCACTGAAGCTGAGAAGCAACTCCAACAATATGCTGAG 1540 ||||| || || ||||| |||||||||||||| |||||| ||| ||| | ||||||||| Sbjct 49588 TATCAACAACTGAGAGAAGCTGCCACTGAAGCAGAGAAGAGACTACAAGAGTATGCTGAG 49647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60256655783104