Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006432.1 Length=18875 Score E Sequences producing significant alignments: (Bits) Value seq729 132 6e-27 seq90 82.4 9e-12 >seq729 Length=875148 Score = 132 bits (146), Expect = 6e-27 Identities = 254/368 (69%), Gaps = 20/368 (5%) Strand=Plus/Plus Query 1170 aaGCAAGGTTCTCTGGTCTTCTGATTGTAAAGACTGTTCTGGACCACATCCTACAAAAAA 1229 |||| || ||||| || || |||||| || | | ||| |||| ||||| | || |||| Sbjct 49295 AAGCCAGATTCTCAGGGCTCTTGATTGCAAGG-CAGTTTTGGATCACATTTTGCACAAAA 49353 Query 1230 CAGATCTTGGAGTACGACTTCATCCACTGGCCAGGACAGCAAAAGTCAAGAATGAGGTCA 1289 ||| | |||| || |||||||||| ||||| | ||| | || || | Sbjct 49354 GAGACC---GAGTTACTCTCCATCCACTGGTAAGGACCATTAGAGTTAG--ATCAGA--A 49406 Query 1290 GTTCA----TTCAAGGCAGCTCTTGGCTCACTTGCCAAGCATGGAGAATATGCTCCATTT 1345 ||| | |||||| |||| || | |||||| |||| | | || ||| ||| Sbjct 49407 GTTGAAAGCTTCAAGCCAGCACTAGAAGGACTTGC------TGGACATT-TGTTCCCTTT 49459 Query 1346 GCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAACATGGGCTTTATCCACAACTC 1405 |||| |||| ||| | ||||| ||||| || || || | ||| || | ||| || || Sbjct 49460 GCACAGATCCTAAATTTGTCTGGGGTCAATAATTTAGAGCTTGGTCTGT-TCCCCAGCTG 49518 Query 1406 TCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGCACGCTGGCTGGTGTTAATGTA 1465 |||| |||||| | || || || || || ||||| |||| ||| ||| | | ||| Sbjct 49519 TCAGTGATTGCTCTAGGAGTAGCCACAGCACACGGTTGCACCTTGGTTGGCATCACTGTT 49578 Query 1466 GGGGAGCAATATCAGCAACTGCGTGAGGCTGCTACTGAAGCTGAAAAGCAACTCCAACAA 1525 || ||||||||||| |||||| | || ||||| |||||||| || ||| ||| ||| | Sbjct 49579 GGAGAGCAATATCAACAACTGAGAGAAGCTGCCACTGAAGCAGAGAAGAGACTACAAGAG 49638 Query 1526 TATGCTGA 1533 |||||||| Sbjct 49639 TATGCTGA 49646 >seq90 Length=2967415 Score = 82.4 bits (90), Expect = 9e-12 Identities = 131/189 (69%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 1331 GAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAACATGGG 1390 ||||||||||| |||||||| | | | || || |||||||||||| |||| |||||| Sbjct 3097 GAATATGCTCCCTTTGCACGAACCATGAGCCTATCAGGAGTCAACAACCTGGAGCATGGG 3156 Query 1391 CTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGCACGCTG 1450 | | | ||||| || |||||| | || ||||| |||||||| |||| || Sbjct 3157 CCATTCTCTCAACTGTCGGCCATTAACCTACAAGTAGCAACAGCCCACGGATGCACCCTA 3216 Query 1451 GCTGGTGTTAATGTAGGGGAGCAATATCA--------GCAACTGCGTGAGGCTGCTACTG 1502 ||||| | ||||| || ||||| || || ||||| | |||||||| | Sbjct 3217 GCTGGCATGGCAGTAGGAGAACAATAGCAACAGCTACGCTGCTGCGGAAAGCTGCTACCG 3276 Query 1503 AAGCTGAAA 1511 |||| |||| Sbjct 3277 AAGCAGAAA 3285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60205520401088