Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_014373.1 Length=18940 Score E Sequences producing significant alignments: (Bits) Value seq729 125 9e-25 seq90 84.2 3e-12 >seq729 Length=875148 Score = 125 bits (138), Expect = 9e-25 Identities = 124/159 (78%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 1355 CTGAATCTATCTGGGGTTAATAATCTTGAGCATGGGCTTTTCCCTCAACTTTCTGCAATT 1414 || ||| | |||||||| |||||| | |||| ||| || ||||| || || || | ||| Sbjct 49469 CTAAATTTGTCTGGGGTCAATAATTTAGAGCTTGGTCTGTTCCC-CAGCTGTCAGTGATT 49527 Query 1415 GCTTTGGGAGTAGCAACTGCACATGGGAGCACTCTGGCTGGAGTCAATGTAGGAGAGCAA 1474 ||| | |||||||| || ||||| || |||| ||| ||| ||| ||| ||||||||| Sbjct 49528 GCTCTAGGAGTAGCCACAGCACACGGTTGCACCTTGGTTGGCATCACTGTTGGAGAGCAA 49587 Query 1475 TACCAACAACTGCGAGAAGCAGCCACTGAGGCCGAAAAG 1513 || ||||||||| ||||||| |||||||| || || ||| Sbjct 49588 TATCAACAACTGAGAGAAGCTGCCACTGAAGCAGAGAAG 49626 >seq90 Length=2967415 Score = 84.2 bits (92), Expect = 3e-12 Identities = 141/205 (69%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 1331 GAATATGCCCCGTTTGCTCGTCTGCTGAATCTATCTGGGGTTAATAATCTTGAGCATGGG 1390 |||||||| || ||||| || ||| ||||| || || || || || ||||||||| Sbjct 3097 GAATATGCTCCCTTTGCACGAACCATGAGCCTATCAGGAGTCAACAACCTGGAGCATGGG 3156 Query 1391 CTTTTCCCTCAACTTTCTGCAATTGCTTTGGGAGTAGCAACTGCACATGGGAGCACTCTG 1450 | ||| ||||||| || || ||| | ||||||||| || || || |||| || Sbjct 3157 CCATTCTCTCAACTGTCGGCCATTAACCTACAAGTAGCAACAGCCCACGGATGCACCCTA 3216 Query 1451 GCTGGAGTCAATGTAGGAGAGCAATACCAACAACT--------GCGAGAAGCAGCCACTG 1502 ||||| | |||||||| ||||| ||||| || ||| |||| || || | Sbjct 3217 GCTGGCATGGCAGTAGGAGAACAATAGCAACAGCTACGCTGCTGCGGAAAGCTGCTACCG 3276 Query 1503 AGGCCGAAAAGCAGTTGCAGAAATA 1527 | || |||| | ||||||||||| Sbjct 3277 AAGCAGAAAGACGTTTGCAGAAATA 3301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60413257890528