Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq86 104 1e-19 seq616 91.5 8e-16 >seq86 Length=3005415 Score = 104 bits (114), Expect = 1e-19 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| Sbjct 1373316 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAAAGCGTGCGCTCGTGCTCCACTTCC 1373257 Query 897 CCGAC 901 ||||| Sbjct 1373256 CCGAC 1373252 >seq616 Length=1042186 Score = 91.5 bits (100), Expect = 8e-16 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 829681 CTGCTTAGGCATAGTTCACCATCTTTCGGGTCCTAACAAGTGCACTCGTGCTCCACCTCC 829622 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | |||| || || || || |||||||||| Sbjct 829621 CTGACGTGGCAGG--CG-AG-ACGGGCCGGT 829595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2857579797696