Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_024781.1 Length=19114 Score E Sequences producing significant alignments: (Bits) Value seq729 100 3e-17 >seq729 Length=875148 Score = 100 bits (110), Expect = 3e-17 Identities = 227/336 (68%), Gaps = 14/336 (4%) Strand=Plus/Plus Query 767 AGATTCTCAGGGCTTCTTATTGTGAAAACAGTTCTAGAGTTCATCCTACAAAAAACTGAT 826 |||||||||||||| | |||| || ||||| | || ||| | || |||| || Sbjct 49300 AGATTCTCAGGGCTCTTGATTG-CAAGGCAGTTTTGGATCACATTTTGCACAAAAGAGA- 49357 Query 827 TCAGGGGTGGCATTGCATCCACTTGTGCGGACCTCAAAAGTAAAAAATGAAGTTGCAAGC 886 | || | | |||||||| || ||||| | ||| | | ||||||| |||| Sbjct 49358 --CCGAGTTACTCTCCATCCACTGGTAAGGACCATTAGAGTTAGATCAGAAGTTGAAAGC 49415 Query 887 TTCAAACAGGCA-TTGAGTAACTTAGCTCGTCATGGAGAGTACGCACCATTTGCACGGGT 945 ||||| | ||| | || |||| ||| | || | | || ||||||| | | Sbjct 49416 TTCAAGCCAGCACTAGAAGGACTT-GCTGGACA-------TTTGTTCCCTTTGCACAGAT 49467 Query 946 TTTGAATTTATCAGGGATCAATAACCTTGAGCATGGGCTCTATCCTCAGCTTTCAGCAAT 1005 | ||||| || ||| ||||||| | |||| ||| || | ||| ||||| |||| || Sbjct 49468 CCTAAATTTGTCTGGGGTCAATAATTTAGAGCTTGGTCTGT-TCCCCAGCTGTCAGTGAT 49526 Query 1006 TGCACTGGGCGTTGCAACAGCACATGGCAGTACATTGGCTGGTGTTAACGTTGGCGAACA 1065 ||| || || || || |||||||| || | || |||| ||| | | ||||| || || Sbjct 49527 TGCTCTAGGAGTAGCCACAGCACACGGTTGCACCTTGGTTGGCATCACTGTTGGAGAGCA 49586 Query 1066 ATACCAACAACTGCGAGAAGCAGCACATGATGCAGA 1101 ||| ||||||||| ||||||| || ||| ||||| Sbjct 49587 ATATCAACAACTGAGAGAAGCTGCCACTGAAGCAGA 49622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60969355169952