Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq22 345 3e-91 seq3 253 2e-63 >seq22 Length=17426531 Score = 345 bits (382), Expect = 3e-91 Identities = 241/272 (89%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||| Sbjct 6182832 ATGTGCAGCCTATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTAGGAGT 6182773 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 || ||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| Sbjct 6182772 GCTAGATACTGTGCTGAGTGC--TAGACTGCATCCTGCTGAGGAAAGAGACTTTTGGGCA 6182715 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||||| ||||||||| |||||||||| || ||||||||||||||||| ||| Sbjct 6182714 GAGTCAAGCATGTTAGGCCTCAAAGTCACCTACTTCGCACTGATGGATGGAAAGGTCTAT 6182655 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || || |||||||||| |||||||||| |||||||||||| |||||||| | |||||| Sbjct 6182654 GACATTACAGAGTGGGATGGATGCCAGTGTGTGGGAATCTACCCAGATATC--CAGAGTT 6182597 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||| |||||||||||||| ||||||| Sbjct 6182596 CCCTATCATATCTCATTTGGTTCTTGGATGCC 6182565 >seq3 Length=37708006 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1165801 AGGAGGTTTGAAATGGACCGTGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAATAGA 1165742 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1165741 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 1165682 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 1165681 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATTACAG 1165639 Score = 131 bits (144), Expect = 1e-26 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 1165553 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 1165494 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 | |||||||||||||| |||||||| Sbjct 1165493 ATATCTCATTTGGTTCTCGGATGCC 1165469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40088976312924