Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq22 345 3e-91
seq3 253 2e-63
>seq22
Length=17426531
Score = 345 bits (382), Expect = 3e-91
Identities = 241/272 (89%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
|||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 6182832 ATGTGCAGCCTATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTAGGAGT 6182773
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|| ||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 6182772 GCTAGATACTGTGCTGAGTGC--TAGACTGCATCCTGCTGAGGAAAGAGACTTTTGGGCA 6182715
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| |||||||| ||||||||| |||||||||| || ||||||||||||||||| |||
Sbjct 6182714 GAGTCAAGCATGTTAGGCCTCAAAGTCACCTACTTCGCACTGATGGATGGAAAGGTCTAT 6182655
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|| || |||||||||| |||||||||| |||||||||||| |||||||| | ||||||
Sbjct 6182654 GACATTACAGAGTGGGATGGATGCCAGTGTGTGGGAATCTACCCAGATATC--CAGAGTT 6182597
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | ||| |||||||||||||| |||||||
Sbjct 6182596 CCCTATCATATCTCATTTGGTTCTTGGATGCC 6182565
>seq3
Length=37708006
Score = 253 bits (280), Expect = 2e-63
Identities = 154/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1165801 AGGAGGTTTGAAATGGACCGTGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAATAGA 1165742
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1165741 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 1165682
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1165681 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATTACAG 1165639
Score = 131 bits (144), Expect = 1e-26
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1165553 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 1165494
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
| |||||||||||||| ||||||||
Sbjct 1165493 ATATCTCATTTGGTTCTCGGATGCC 1165469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40088976312924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |