Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq22 369 3e-98 seq3 259 4e-65 >seq22 Length=17426531 Score = 369 bits (408), Expect = 3e-98 Identities = 260/294 (88%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 4966 AATGAATACGAT-GATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||||| || |||||||| || |||||| ||||||||||||||||||||||||||| Sbjct 6182846 AATGAATACTATAGATGTGCAGCCTATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 6182787 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||| Sbjct 6182786 GGGAACCTAGGAGTGCTAGATACTGTGCTGAGTGC--TAGACTGCATCCTGCTGAGGAAA 6182729 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||| Sbjct 6182728 GAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAGTCACCTACTTCGCACTGATGG 6182669 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| || |||||||||| |||||||||| |||||||||||| ||||| Sbjct 6182668 ATGGAAAGGTCTATGACATTACAGAGTGGGATGGATGCCAGTGTGTGGGAATCTACCCAG 6182609 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 ||| | |||||| || ||||| ||| |||||||||| |||||||||| |||| Sbjct 6182608 ATATC--CAGAGTTCCCTATCATATCTCATTTGGTTCTTGGATGCCAGGCACCA 6182557 >seq3 Length=37708006 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1165801 AGGAGGTTTGAAATGGACCGTGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAATAGA 1165742 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1165741 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 1165682 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 1165681 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATTACAG 1165639 Score = 143 bits (158), Expect = 2e-30 Identities = 88/94 (94%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1165553 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 1165494 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||||||||||| ||||| Sbjct 1165493 ATATCTCATTTGGTTCTCGGATGCCAGGCACCAG 1165460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40181708251432