Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq22 369 3e-98
seq3 259 4e-65
>seq22
Length=17426531
Score = 369 bits (408), Expect = 3e-98
Identities = 260/294 (88%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 4966 AATGAATACGAT-GATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024
||||||||| || |||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 6182846 AATGAATACTATAGATGTGCAGCCTATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 6182787
Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084
||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 6182786 GGGAACCTAGGAGTGCTAGATACTGTGCTGAGTGC--TAGACTGCATCCTGCTGAGGAAA 6182729
Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144
| |||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||
Sbjct 6182728 GAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAGTCACCTACTTCGCACTGATGG 6182669
Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204
|||||||||| ||||| || |||||||||| |||||||||| |||||||||||| |||||
Sbjct 6182668 ATGGAAAGGTCTATGACATTACAGAGTGGGATGGATGCCAGTGTGTGGGAATCTACCCAG 6182609
Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
||| | |||||| || ||||| ||| |||||||||| |||||||||| ||||
Sbjct 6182608 ATATC--CAGAGTTCCCTATCATATCTCATTTGGTTCTTGGATGCCAGGCACCA 6182557
>seq3
Length=37708006
Score = 259 bits (286), Expect = 4e-65
Identities = 155/163 (95%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1165801 AGGAGGTTTGAAATGGACCGTGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAATAGA 1165742
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1165741 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 1165682
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1165681 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATTACAG 1165639
Score = 143 bits (158), Expect = 2e-30
Identities = 88/94 (94%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1165553 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 1165494
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
| ||| |||||||||| ||||||||||| |||||
Sbjct 1165493 ATATCTCATTTGGTTCTCGGATGCCAGGCACCAG 1165460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40181708251432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |