Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_007652.1 Length=14071 Score E Sequences producing significant alignments: (Bits) Value seq66 84.2 2e-12 >seq66 Length=5789316 Score = 84.2 bits (92), Expect = 2e-12 Identities = 242/351 (69%), Gaps = 41/351 (12%) Strand=Plus/Plus Query 6603 ACCACAACACAAGCAACTGCA-CAACTG--ACAACACCAACAGCCCCAAAAGCAAGCATA 6659 || |||||| |||||| ||| |||| | |||||| ||||||| ||| | ||| | | Sbjct 2406427 ACAACAACAACAGCAACAGCAACAACAGCAACAACAACAACAGCAACAACAACAACAACA 2406486 Query 6660 GCACCCA-AG-AACAGACAGGCAACAACCaaaaaaaCCGAAACGGGCACCacaacaacaa 6717 ||| | | || |||| ||| ||||||| | || ||| | ||| || ||| || ||| Sbjct 2406487 GCAGCAACAGCAACA-ACAA-CAACAACAACAACAACAGCAACA---ACAACAGCAGCAA 2406541 Query 6718 gcagagcaa-agaaaaccaacaacccaacagagacagcaacaacaactctcaaagcaaca 6776 | ||||| || || ||||||| |||| |||||||||||||| | ||||||| Sbjct 2406542 CAATAGCAACAGCAA--CAACAAC--AACAACAACAGCAACAACAACAGCAACAGCAACA 2406597 Query 6777 acagaaacaggcaagggcaaagaGGGGCCAACA-CAGCACACAATCAAAGAACAGCCCGA 6835 ||| ||||| ||| ||| ||||| ||||| |||| || |||||| Sbjct 2406598 ACAACAACAG-CAA---CAA--------CAACAACAGCA-ACAAC--AACAACAGC---- 2406638 Query 6836 AACAACAGCAGGAGAAACAACTACCCCACAGTCAAGAAGAACAACCAGCAGGCCAGCCCC 6895 ||||||||||| || |||||| | || ||| || | ||| || ||| |||| | Sbjct 2406639 AACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGCAA-CAACAG--CAGCAAC 2406695 Query 6896 AACAACAAAAACCG-AAGAGGAG--GCAGAAACCACCAAAACAAGAACAAC 6943 |||||||| ||| | || | || |||| ||| || | | ||| |||||| Sbjct 2406696 AACAACAACAACAGCAACAACAGCAGCAGCAACAACAACAGCAACAACAAC 2406746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 44874948013206