Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_007652.1
Length=14071
Score E
Sequences producing significant alignments: (Bits) Value
seq66 84.2 2e-12
>seq66
Length=5789316
Score = 84.2 bits (92), Expect = 2e-12
Identities = 242/351 (69%), Gaps = 41/351 (12%)
Strand=Plus/Plus
Query 6603 ACCACAACACAAGCAACTGCA-CAACTG--ACAACACCAACAGCCCCAAAAGCAAGCATA 6659
|| |||||| |||||| ||| |||| | |||||| ||||||| ||| | ||| | |
Sbjct 2406427 ACAACAACAACAGCAACAGCAACAACAGCAACAACAACAACAGCAACAACAACAACAACA 2406486
Query 6660 GCACCCA-AG-AACAGACAGGCAACAACCaaaaaaaCCGAAACGGGCACCacaacaacaa 6717
||| | | || |||| ||| ||||||| | || ||| | ||| || ||| || |||
Sbjct 2406487 GCAGCAACAGCAACA-ACAA-CAACAACAACAACAACAGCAACA---ACAACAGCAGCAA 2406541
Query 6718 gcagagcaa-agaaaaccaacaacccaacagagacagcaacaacaactctcaaagcaaca 6776
| ||||| || || ||||||| |||| |||||||||||||| | |||||||
Sbjct 2406542 CAATAGCAACAGCAA--CAACAAC--AACAACAACAGCAACAACAACAGCAACAGCAACA 2406597
Query 6777 acagaaacaggcaagggcaaagaGGGGCCAACA-CAGCACACAATCAAAGAACAGCCCGA 6835
||| ||||| ||| ||| ||||| ||||| |||| || ||||||
Sbjct 2406598 ACAACAACAG-CAA---CAA--------CAACAACAGCA-ACAAC--AACAACAGC---- 2406638
Query 6836 AACAACAGCAGGAGAAACAACTACCCCACAGTCAAGAAGAACAACCAGCAGGCCAGCCCC 6895
||||||||||| || |||||| | || ||| || | ||| || ||| |||| |
Sbjct 2406639 AACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGCAA-CAACAG--CAGCAAC 2406695
Query 6896 AACAACAAAAACCG-AAGAGGAG--GCAGAAACCACCAAAACAAGAACAAC 6943
|||||||| ||| | || | || |||| ||| || | | ||| ||||||
Sbjct 2406696 AACAACAACAACAGCAACAACAGCAGCAGCAACAACAACAGCAACAACAAC 2406746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 44874948013206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |