Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq63698 114 7e-23
seq57336 114 7e-23
seq56166 114 7e-23
seq18288 114 7e-23
seq16756 114 7e-23
seq16752 114 7e-23
seq16751 114 7e-23
seq16750 114 7e-23
seq16745 114 7e-23
seq16700 114 7e-23
seq62715 109 3e-21
seq60486 105 4e-20
seq61850 104 1e-19
seq18287 87.8 1e-14
>seq63698
Length=875
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 154 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 95
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 94 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 68
>seq57336
Length=1427
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 599 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 540
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 539 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 513
>seq56166
Length=1068
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 142 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 83
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 82 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 56
>seq18288
Length=2655
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 2247 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 2306
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 2307 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 2333
>seq16756
Length=1495
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 471 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 530
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 531 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 557
>seq16752
Length=2016
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1572 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1631
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 1632 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1658
>seq16751
Length=2011
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1870 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1929
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 1930 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1956
>seq16750
Length=1463
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1328 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1387
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 1388 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1414
>seq16745
Length=5257
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 4339 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 4398
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 4399 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 4425
>seq16700
Length=1852
Score = 114 bits (126), Expect = 7e-23
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1383 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1324
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 1323 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1297
>seq62715
Length=1095
Score = 109 bits (120), Expect = 3e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 237 CTGCCCATGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 178
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 177 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 151
>seq60486
Length=1243
Score = 105 bits (116), Expect = 4e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 135 CTGTCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 76
Query 897 CCGACGCGGTCGGGT 911
||| ||||| |||||
Sbjct 75 CCGGCGCGG-CGGGT 62
>seq61850
Length=1158
Score = 104 bits (114), Expect = 1e-19
Identities = 79/88 (90%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 840 CCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCG 899
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 1060 CCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCCCCG 1119
Query 900 ACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||||| |||| || || || |||||||
Sbjct 1120 GCGCGG-CGGG-CG-AG-ACTGGCCGGT 1143
>seq18287
Length=1595
Score = 87.8 bits (96), Expect = 1e-14
Identities = 78/91 (86%), Gaps = 5/91 (5%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||| | | |||||||||||| |||| ||||||| ||||||||||||
Sbjct 1362 CTGCCCAGGCATAGTG-ATGAACTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1420
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
||| ||||| |||| || || ||||||||||
Sbjct 1421 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2858876676114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |