Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq63698 114 7e-23 seq57336 114 7e-23 seq56166 114 7e-23 seq18288 114 7e-23 seq16756 114 7e-23 seq16752 114 7e-23 seq16751 114 7e-23 seq16750 114 7e-23 seq16745 114 7e-23 seq16700 114 7e-23 seq62715 109 3e-21 seq60486 105 4e-20 seq61850 104 1e-19 seq18287 87.8 1e-14 >seq63698 Length=875 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 154 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 95 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 94 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 68 >seq57336 Length=1427 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 599 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 540 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 539 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 513 >seq56166 Length=1068 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 142 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 83 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 82 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 56 >seq18288 Length=2655 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 2247 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 2306 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 2307 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 2333 >seq16756 Length=1495 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 471 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 530 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 531 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 557 >seq16752 Length=2016 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 1572 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1631 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1632 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1658 >seq16751 Length=2011 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 1870 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1929 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1930 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1956 >seq16750 Length=1463 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 1328 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1387 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1388 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1414 >seq16745 Length=5257 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 4339 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 4398 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 4399 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 4425 >seq16700 Length=1852 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 1383 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1324 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1323 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1297 >seq62715 Length=1095 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||| |||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 237 CTGCCCATGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 178 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 177 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 151 >seq60486 Length=1243 Score = 105 bits (116), Expect = 4e-20 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 135 CTGTCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 76 Query 897 CCGACGCGGTCGGGT 911 ||| ||||| ||||| Sbjct 75 CCGGCGCGG-CGGGT 62 >seq61850 Length=1158 Score = 104 bits (114), Expect = 1e-19 Identities = 79/88 (90%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 840 CCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCG 899 ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| Sbjct 1060 CCCAGGCATAGTTCACCATCTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCCCCG 1119 Query 900 ACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| |||| || || || ||||||| Sbjct 1120 GCGCGG-CGGG-CG-AG-ACTGGCCGGT 1143 >seq18287 Length=1595 Score = 87.8 bits (96), Expect = 1e-14 Identities = 78/91 (86%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||| | | |||||||||||| |||| ||||||| |||||||||||| Sbjct 1362 CTGCCCAGGCATAGTG-ATGAACTTTCGGGTCCTGACGCGTGCGCTCATGCTCCACCTCC 1420 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1421 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2858876676114