Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1726 250 2e-62 seq3104 178 1e-40 seq2229 158 1e-34 seq2432 134 1e-27 seq2435 125 6e-25 >seq1726 Length=555401 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| Sbjct 336481 AGGAGGTTTGAAATGGATCGTGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 336540 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||| Sbjct 336541 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 336600 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 336601 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 336643 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 336733 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 336792 Query 5241 ACATCTCATTTGGTTCACGG 5260 | |||||||||||||| ||| Sbjct 336793 ATATCTCATTTGGTTCTCGG 336812 >seq3104 Length=241575 Score = 178 bits (196), Expect = 1e-40 Identities = 201/263 (76%), Gaps = 16/263 (6%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||| ||||||||| ||| ||||| ||| || | ||||||||||| Sbjct 67293 ATGTGTAGCCGATGCAAGGGAAAGCGTAGA---TTTGAGATG-ACTGTGAACCTAAGAGA 67238 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||||| |||| |||||||||||| | ||| || | Sbjct 67237 ACCAGATACTGTGCTGAGTGTAATA-----CATC-TGCTGAGGAAGGAGGCTT---GGGA 67187 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || |||||||||||||||| |||| ||| || || ||| |||||||| | || Sbjct 67186 GATTCAAGCATGTTGGGCCTCATGATCAGTTACATTATACTCATGAATGGAAAGATCCAT 67127 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || || ||||||||||| ||| ||||| || || ||| | | | |||||| || ||| Sbjct 67126 GACATTACAGAGTGGGCAGGACTCCAGCATGCGGCAAT-TGCACGGATACCTAC--AGTT 67070 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 || | || ||||||| ||| || Sbjct 67069 CCGTATCGCATCTCAGCTGGCTC 67047 >seq2229 Length=534671 Score = 158 bits (174), Expect = 1e-34 Identities = 161/205 (79%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 ||| |||||||||||| | |||||||||| ||||| |||||| ||| | ||||||| Sbjct 164472 GATGCTGTGCTGAGTGCA-TAGGCTGCATTCTGCTCGGGAAGGAGACCTG-GGGCAGAAC 164529 Query 5118 CGA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGAT 5176 | | |||||| | ||||| | |||| ||||| || |||| |||||||||| | ||| Sbjct 164530 CAAAGCATGTGGAGCCTCGAGATCATGTACTTGGCATGGATGAATGGAAAGGTCTGTGAC 164589 Query 5177 ATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCT 5236 |||| |||||||||||||||||| |||||||||||||| || |||| |||||| || Sbjct 164590 ATCATGGAGTGGGCTGGATGCCAGTATGTGGGAATCTCCCGAGTTACC--CAGAGTTCCC 164647 Query 5237 TGTCACATCTCATTTGGTTCACGGA 5261 ||||| |||| | ||||||| || Sbjct 164648 GATCACACCTCACTGGGTTCACAGA 164672 >seq2432 Length=271758 Score = 134 bits (148), Expect = 1e-27 Identities = 189/263 (72%), Gaps = 22/263 (8%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||| | || ||| |||| | ||||| | || | |||||| |||||| Sbjct 88816 ATGTGCAGCCTA------GGGAAGTGTAGGGGATTTGAGACAGATCAGGAACCCAAGAGT 88869 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||| |||||||||||||||||||||| |||||| ||| |||||| ||| ||||| | Sbjct 88870 TCCAGACACTGTGCTGAGTGTAATAGGCTACATCCTCCTGGGGAAGGAGAC--TTGGGTA 88927 Query 5114 GAGTCGAGCA----TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 || | |||| | ||||||| |||| || ||| |||||||| || | Sbjct 88928 GATTTAAGCAAGACAGGCAGGCCTCATGATCA--------GCACTGGTGGATGGAGAGAT 88979 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 ||||| ||||| ||| |||||||| | ||| |||||| ||| || |||||||||| Sbjct 88980 -TATGACGTCACAAAGTAGGCTGGATTCTAGCATGTGGGCATC-ACCTGGATACCCACAT 89037 Query 5230 AGTCCCTTGTCACATCTCATTTG 5252 | || ||||||||| ||| Sbjct 89038 GATTCCACACCACATCTCAGTTG 89060 >seq2435 Length=229477 Score = 125 bits (138), Expect = 6e-25 Identities = 179/249 (72%), Gaps = 21/249 (8%) Strand=Plus/Plus Query 5008 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5067 ||||||| || | ||||||||| ||| ||| || ||| | |||||| || |||| Sbjct 115979 CCAGGGAC-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCA 116037 Query 5068 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTT 5127 |||| ||||| ||||| |||||||||||||| |||||| | | || | |||||| | Sbjct 116038 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTTAGAGTAG--TAAAGCATGCT 116093 Query 5128 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5187 ||||||||| |||||||||||| |||||| ||||||| || | ||| || |||| | Sbjct 116094 GGGCCTCAAGTTCACCTACTTTGTACTGATGAATGGAAATGTCTGTGACAT--TAGAGAG 116151 Query 5188 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTC 5247 || |||| |||| | ||||||||| |||| || | |||||| | Sbjct 116152 GGACAGATGTCAGC--AGGAGAATCTCCC------------GAGTTCCATATCACATGAC 116197 Query 5248 ATTTGGTTC 5256 ||||||||| Sbjct 116198 ATTTGGTTC 116206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40092031830564