Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1726 253 2e-63 seq3104 196 4e-46 seq2229 163 2e-36 seq2435 152 4e-33 seq2432 149 5e-32 >seq1726 Length=555401 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| Sbjct 336481 AGGAGGTTTGAAATGGATCGTGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 336540 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct 336541 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 336600 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 336601 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 336643 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 336733 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 336792 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||| | ||||| ||||| Sbjct 336793 ATATCTCATTTGGTTCTCGGGTACCAGGCACCAG 336826 >seq3104 Length=241575 Score = 196 bits (216), Expect = 4e-46 Identities = 224/295 (76%), Gaps = 16/295 (5%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| |||| ||||||| | ||||||| ||||||||| ||| ||||| ||| || Sbjct 67307 CAATGGATACTGTGATGTGTAGCCGATGCAAGGGAAAGCGTAGA---TTTGAGATG-ACT 67252 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 | ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| Sbjct 67251 GTGAACCTAAGAGAACCAGATACTGTGCTGAGTGTAATA-----CATC-TGCTGAGGAAG 67198 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | | ||| || ||| ||||||||||||||||||| |||| ||| || || ||| Sbjct 67197 GAGGCTT---GGGAGATTCAAGCATGTTGGGCCTCATGATCAGTTACATTATACTCATGA 67141 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||| | |||| || ||||||||||| ||| ||||| || || ||| | | | | Sbjct 67140 ATGGAAAGATCCATGACATTACAGAGTGGGCAGGACTCCAGCATGCGGCAAT-TGCACGG 67082 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| || ||| || |||| |||| || ||| || || | ||||| | ||| Sbjct 67081 ATACCTAC--AGTTCCGTATCGCATCTCAGCTGGCTCTTGGGTACCAGGCAACAG 67029 >seq2229 Length=534671 Score = 163 bits (180), Expect = 2e-36 Identities = 178/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 5043 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5102 ||| |||||||||||| | |||||||||| ||||| |||||| ||| | ||||||| Sbjct 164472 GATGCTGTGCTGAGTGCA-TAGGCTGCATTCTGCTCGGGAAGGAGAC-CTGGGGCAGAAC 164529 Query 5103 C-AAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGAT 5161 | |||||||| | ||||| | |||| ||||| || |||| |||||||||| | ||| Sbjct 164530 CAAAGCATGTGGAGCCTCGAGATCATGTACTTGGCATGGATGAATGGAAAGGTCTGTGAC 164589 Query 5162 ATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCT 5221 |||| |||||||||||||||||| |||||||||||||| || |||| |||||| || Sbjct 164590 ATCATGGAGTGGGCTGGATGCCAGTATGTGGGAATCTCCCGAGTTACC--CAGAGTTCCC 164647 Query 5222 TATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG-ACCAGAGAG 5270 |||||| | || | ||||||| || | ||| | || | | ||||||| Sbjct 164648 GATCACACCTCACTGGGTTCACAGACACTAGGCATCACAGTAGCAGAGAG 164697 >seq2435 Length=229477 Score = 152 bits (168), Expect = 4e-33 Identities = 205/281 (73%), Gaps = 22/281 (8%) Strand=Plus/Plus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||||| || | ||||||||| ||| ||| || ||| | |||||| || |||| Sbjct 115979 CCAGGGAC-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCA 116037 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTT 5112 |||| ||||| ||||| |||||||||||||| |||||| | | || | ||||||| | Sbjct 116038 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTTAGAGTAG--TAAAGCATGCT 116093 Query 5113 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5172 ||||||||| |||||||||||| |||||| ||||||| || | ||| || |||| | Sbjct 116094 GGGCCTCAAGTTCACCTACTTTGTACTGATGAATGGAAATGTCTGTGACAT--TAGAGAG 116151 Query 5173 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCC 5232 || |||| |||| | ||||||||| |||| || |||||||| | Sbjct 116152 GGACAGATGTCAGC--AGGAGAATCTCCC------------GAGTTCCATATCACATGAC 116197 Query 5233 ATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 ||||||||| || | ||||||||||| | ||| |||||| Sbjct 116198 ATTTGGTTCCGGGTTACCAGGTACCAGTGGTCAGAAGAGAG 116238 >seq2432 Length=271758 Score = 149 bits (164), Expect = 5e-32 Identities = 214/299 (72%), Gaps = 22/299 (7%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| |||| | |||||||||| || | || ||| |||| | ||||| | || | Sbjct 88802 CAACGAATCCTATGATGTGCAGCCTA------GGGAAGTGTAGGGGATTTGAGACAGATC 88855 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||| |||||| ||||| |||||||||||||||||||||| |||||| ||| ||||| Sbjct 88856 AGGAACCCAAGAGTTCCAGACACTGTGCTGAGTGTAATAGGCTACATCCTCCTGGGGAAG 88915 Query 5085 GTGACTTTTGGGCAGAGTCAAGCA----TGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 | ||| ||||| ||| | ||||| | ||||||| |||| || ||| Sbjct 88916 GAGAC--TTGGGTAGATTTAAGCAAGACAGGCAGGCCTCATGATCA--------GCACTG 88965 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 |||||||| || | ||||| ||||| ||| |||||||| | ||| |||||| ||| | Sbjct 88966 GTGGATGGAGAGAT-TATGACGTCACAAAGTAGGCTGGATTCTAGCATGTGGGCATC-AC 89023 Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||||||||| | || | |||||| || ||| || || | | | ||||||| Sbjct 89024 CTGGATACCCACATGATTCCACACCACATCTCAGTTGACTCTTGGGTACTACGTACCAG 89082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40184770836952