Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2742 104 1e-19 seq1993 89.7 3e-15 seq1970 87.8 1e-14 seq1607 82.4 4e-13 >seq2742 Length=344328 Score = 104 bits (114), Expect = 1e-19 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 316696 CTGCCCAGGCGTAGTTCACCATCTTTCGGGTACTAACGCGTGCGCTCGTGCTCCACCTCC 316755 Query 897 CCGACGCGGTCGGG 910 ||| | ||| |||| Sbjct 316756 CCGGCACGG-CGGG 316768 >seq1993 Length=194958 Score = 89.7 bits (98), Expect = 3e-15 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 838 TGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||| Sbjct 15786 TGCTCAGGCATAGTTCACCACCTTTAGGGTCCTAACGCGTGCGCTCGTGCTCCACCTCC 15844 >seq1970 Length=296582 Score = 87.8 bits (96), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCT-C 895 ||||| |||||||||||||||||||||||||||||| | |||||| |||||||||| | Sbjct 241899 CTGCCATGGCATAGTTCACCATCTTTCGGGTCCTAACCCGCGCGCTCATGCTCCACCTNC 241840 Query 896 CCCGACGCGGTCGGG 910 |||| ||||| |||| Sbjct 241839 CCCGGCGCGG-CGGG 241826 >seq1607 Length=500845 Score = 82.4 bits (90), Expect = 4e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||| | Sbjct 392297 CTGCCCAGGCATAGTTCACCACCTTTCGGGTCCTAGCATGTGCACTCGTGCTCCACCTTC 392238 Query 897 CCG 899 ||| Sbjct 392237 CCG 392235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859076404654