Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq9997 253 2e-63 seq16094 161 8e-36 seq51594 140 3e-29 seq103030 131 1e-26 seq166196 129 5e-26 >seq9997 Length=27884 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 17636 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 17695 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||| Sbjct 17696 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 17755 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 17756 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 17798 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 17888 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 17947 Query 5241 ACATCTCATTTGGTTCACGG 5260 | |||||||||||||| ||| Sbjct 17948 ATATCTCATTTGGTTCTCGG 17967 >seq16094 Length=23037 Score = 161 bits (178), Expect = 8e-36 Identities = 174/224 (78%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 5039 CGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAA 5098 || |||||| |||||| | || |||||||||||| | |||||||||| ||||| |||| Sbjct 21816 CGAGAACCTCAGAGTGTGA-ATGCTGTGCTGAGTGCA-TAGGCTGCATTCTGCTTGGGAA 21759 Query 5099 GGTGACTTTTGGGCAGAGTCGA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5157 || ||| | ||||||| | | |||||| | ||||| | |||| ||||| || ||| Sbjct 21758 GGAGACCTG-GGGCAGAACCAAAGCATGTGGAGCCTCGAGATCATGTACTTGGCATGGAT 21700 Query 5158 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5217 | |||||||||| | ||| || | ||||||||||| ||||||| |||||||||||||| Sbjct 21699 GAATGGAAAGGTCTGTGACATAATGGAGTGGGCTGGGTGCCAGCATGTGGGAATCTCCCG 21640 Query 5218 AGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGA 5261 || |||| |||||| || ||||| |||| | ||||||| || Sbjct 21639 AGTTACC--CAGAGTTCCCGATCACACCTCACTGGGTTCACAGA 21598 >seq51594 Length=12488 Score = 140 bits (154), Expect = 3e-29 Identities = 197/271 (73%), Gaps = 18/271 (7%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||| | | |||| ||| ||||| ||| || |||||||||||| Sbjct 9082 ATGTGTAGCCGATGCAAAGAAAAGTGTAGA---TTTGAGATG-ACTAGGAACCTAAGAGA 9027 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCAT---CCTGCTGAGGAAGGTGACTTTTGG 5110 |||||||||||||||||||||||||| ||| ||||| ||||||| | ||| | Sbjct 9026 ACCAGATACTGTGCTGAGTGTAATAGGTGACATACATCTGCTAAGGAAGGAGGCTT---G 8970 Query 5111 GCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT- 5169 | ||| || |||||||||||||||| |||| ||| || || ||| |||||||| | Sbjct 8969 GAAGATTCAAGCATGTTGGGCCTCATGATCAGTTACATTATACTCATGAATGGAAAGATC 8910 Query 5170 ----GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCC 5225 ||||| | ||||||||||| ||| ||||| || || ||| | | |||||| Sbjct 8909 CATGACATGATGTTACAGAGTGGGCAGGACTCCAGCATGCGGCAAT-TGCGTGGATACC- 8852 Query 5226 ACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 | ||| || | || ||||||| ||| || Sbjct 8851 -TATAGTTCCGTATCGCATCTCAGCTGGCTC 8822 >seq103030 Length=11714 Score = 131 bits (144), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 25/262 (10%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||| | || ||| |||||| ||||| || || | |||||| |||||| Sbjct 3543 ATGTGCAGCCTA------GGGAAGTGTAGGAGATTTGAGATAGATCAGGAACCCAAGAGT 3596 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||| ||||| ||||||| ||||||| |||||| ||| |||||| ||||| ||| | Sbjct 3597 TCCA----CTGTGGTGAGTGTCATAGGCTACATCCTCCTGGGGAAGGAGACTT--GGGTA 3650 Query 5114 GAGTCGAGCATGTTGG---GCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTG 5170 || |||| || |||||| |||| || ||| |||||| | || | Sbjct 3651 GATCTAAGCAGTCAGGCTGGCCTCATGATCA--------GCACTGGTGGATGAAGAGAT- 3701 Query 5171 TATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA 5230 ||||| |||||||||||||||||| | ||| |||||| |||| || ||||||||||| Sbjct 3702 TATGACGTCACAGAGTGGGCTGGATTCTAGCATGTGGGCATCT-CCTGGATACCCACAGG 3760 Query 5231 GTCCCTTGTCACATCTCATTTG 5252 | || ||||||||| ||| Sbjct 3761 ATTCCACACCACATCTCAGTTG 3782 >seq166196 Length=3129 Score = 129 bits (142), Expect = 5e-26 Identities = 169/232 (73%), Gaps = 18/232 (8%) Strand=Plus/Plus Query 5025 GGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGC 5084 ||||||| ||| ||| || ||| | |||||| || |||| |||| ||||| |||| Sbjct 2244 GGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCAGGAGT--AATAGCCTGC 2301 Query 5085 ATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCT 5144 | |||||||||||||| |||||| | | ||| |||||| |||||||||| |||| | Sbjct 2302 ACCCTGCTGAGGAAGGAGACTTTAGAG--TAGTAAAGCATGCTGGGCCTCAAGTTCACTT 2359 Query 5145 ACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTG 5204 | |||| |||||| |||||||||| | ||| || |||| ||| ||||||||| Sbjct 2360 ATTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAGGGACAGATGCCAGC--A 2415 Query 5205 TGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 | ||||||||| |||||| || | |||||| |||||||||| Sbjct 2416 GGAGAATCTCCC----------CAGAGTTCCATATCACATGACATTTGGTTC 2457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39960226187280