Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002549.1 Length=18959 Score E Sequences producing significant alignments: (Bits) Value seq47383 86.0 8e-13 >seq47383 Length=13221 Score = 86.0 bits (94), Expect = 8e-13 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 1342 AGAGTATGCTCCTTTCGCCCGACTTTTGAACCTTTCTGGAGTAAATAATCTTGAGCATGG 1401 ||| |||||||| ||||| || | | ||||||| ||||| || | || || || || Sbjct 8946 AGAATATGCTCCGTTCGCACGGAGTCTCAACCTTTGAGGAGTCAACAGCCTGGAACACGG 9005 Query 1402 TCTTTTCCCTCAACTATCGGCAATTGCACTCGGAGTC-GCCACAGCACACGGGAGTACCC 1460 || || || || | || || ||||| |||| | || ||||| || || | || | Sbjct 9006 ACTGTTTCCCCAGTTGTCAGCTGTTGCA-TCGGGCACAGCTACAGCTCATGGTGGCACTC 9064 Query 1461 TCGCAGGAGTAAATGTTGGAGAACAGTATCAACAACTCAGAGAGGCTGCCACTGAGGCTG 1520 | | || || | |||||||||||| || || |||||| | || ||||||| |||||||| Sbjct 9065 TTG--GGTGTTACTGTTGGAGAACAATACCAGCAACTCTGGGAAGCTGCCAGTGAGGCTG 9122 Query 1521 AGA 1523 ||| Sbjct 9123 AGA 9125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60305038047560