Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq9997 259 4e-65 seq16094 167 2e-37 seq51594 161 8e-36 seq166196 150 1e-32 seq103030 145 6e-31 >seq9997 Length=27884 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 17636 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 17695 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct 17696 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 17755 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 17756 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 17798 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 17888 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 17947 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||| | ||||| ||||| Sbjct 17948 ATATCTCATTTGGTTCTCGGGTACCAGGCACCAG 17981 >seq16094 Length=23037 Score = 167 bits (184), Expect = 2e-37 Identities = 175/224 (78%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 5024 CGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAA 5083 || |||||| |||||| | || |||||||||||| | |||||||||| ||||| |||| Sbjct 21816 CGAGAACCTCAGAGTGTGA-ATGCTGTGCTGAGTGCA-TAGGCTGCATTCTGCTTGGGAA 21759 Query 5084 GGTGACTTTTGGGCAGAGTCAA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5142 || ||| | ||||||| ||| |||||| | ||||| | |||| ||||| || ||| Sbjct 21758 GGAGACCTG-GGGCAGAACCAAAGCATGTGGAGCCTCGAGATCATGTACTTGGCATGGAT 21700 Query 5143 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5202 | |||||||||| | ||| || | ||||||||||| ||||||| |||||||||||||| Sbjct 21699 GAATGGAAAGGTCTGTGACATAATGGAGTGGGCTGGGTGCCAGCATGTGGGAATCTCCCG 21640 Query 5203 AGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGA 5246 || |||| |||||| || |||||| | || | ||||||| || Sbjct 21639 AGTTACC--CAGAGTTCCCGATCACACCTCACTGGGTTCACAGA 21598 >seq51594 Length=12488 Score = 161 bits (178), Expect = 8e-36 Identities = 221/303 (73%), Gaps = 18/303 (6%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| |||| ||||||| | ||||||| | | |||| ||| ||||| ||| || Sbjct 9096 CAATGGATACTGTGATGTGTAGCCGATGCAAAGAAAAGTGTAGA---TTTGAGATG-ACT 9041 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCAT---CCTGCTGAGG 5081 |||||||||||| |||||||||||||||||||||||||| ||| ||||| ||| Sbjct 9040 AGGAACCTAAGAGAACCAGATACTGTGCTGAGTGTAATAGGTGACATACATCTGCTAAGG 8981 Query 5082 AAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGA 5141 |||| | ||| || ||| ||||||||||||||||||| |||| ||| || || | Sbjct 8980 AAGGAGGCTT---GGAAGATTCAAGCATGTTGGGCCTCATGATCAGTTACATTATACTCA 8924 Query 5142 TGGATGGAAAGGT-----GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAAT 5196 || |||||||| | ||||| | ||||||||||| ||| ||||| || || ||| Sbjct 8923 TGAATGGAAAGATCCATGACATGATGTTACAGAGTGGGCAGGACTCCAGCATGCGGCAAT 8864 Query 5197 CTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 | | |||||| | ||| || |||| |||| || ||| || || | ||||| || Sbjct 8863 -TGCGTGGATACC--TATAGTTCCGTATCGCATCTCAGCTGGCTCTTGGGTACCAGGCAC 8807 Query 5257 CAG 5259 ||| Sbjct 8806 CAG 8804 >seq166196 Length=3129 Score = 150 bits (166), Expect = 1e-32 Identities = 194/264 (73%), Gaps = 19/264 (7%) Strand=Plus/Plus Query 5010 GGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGC 5069 ||||||| ||| ||| || ||| | |||||| || |||| |||| ||||| |||| Sbjct 2244 GGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCAGGAGT--AATAGCCTGC 2301 Query 5070 ATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCT 5129 | |||||||||||||| |||||| | | ||| ||||||| |||||||||| |||| | Sbjct 2302 ACCCTGCTGAGGAAGGAGACTTTAGAG--TAGTAAAGCATGCTGGGCCTCAAGTTCACTT 2359 Query 5130 ACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTG 5189 | |||| |||||| |||||||||| | ||| || |||| ||| ||||||||| Sbjct 2360 ATTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAGGGACAGATGCCAGC--A 2415 Query 5190 TGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGC 5249 | ||||||||| |||||| || |||||||| |||||||||| || | | Sbjct 2416 GGAGAATCTCCC----------CAGAGTTCCATATCACATGACATTTGGTTCTGGGTTAC 2465 Query 5250 CAGGTACCAGCGACCAG-AGAGAG 5272 ||| |||||| | ||| |||||| Sbjct 2466 CAGATACCAGTGGTCAGAAGAGAG 2489 >seq103030 Length=11714 Score = 145 bits (160), Expect = 6e-31 Identities = 213/298 (71%), Gaps = 25/298 (8%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| |||| | |||||||||| || | || ||| |||||| ||||| || || | Sbjct 3529 CAACGAATCCTATGATGTGCAGCCTA------GGGAAGTGTAGGAGATTTGAGATAGATC 3582 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||| |||||| ||| ||||| ||||||| ||||||| |||||| ||| ||||| Sbjct 3583 AGGAACCCAAGAGTTCCA----CTGTGGTGAGTGTCATAGGCTACATCCTCCTGGGGAAG 3638 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGG---GCCTCAAAATCACCTACTTTGCGCTGA 5141 | ||||| ||| ||| ||||| || |||||| |||| || ||| Sbjct 3639 GAGACTT--GGGTAGATCTAAGCAGTCAGGCTGGCCTCATGATCA--------GCACTGG 3688 Query 5142 TGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCC 5201 |||||| | || | ||||| |||||||||||||||||| | ||| |||||| |||| || Sbjct 3689 TGGATGAAGAGAT-TATGACGTCACAGAGTGGGCTGGATTCTAGCATGTGGGCATCT-CC 3746 Query 5202 CAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||| | || | |||||| || ||| || || | ||||||||| Sbjct 3747 TGGATACCCACAGGATTCCACACCACATCTCAGTTGACTCTTGGGCACTAGGTACCAG 3804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40052660307040