Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006432.1 Length=18875 Score E Sequences producing significant alignments: (Bits) Value seq47383 104 3e-18 >seq47383 Length=13221 Score = 104 bits (114), Expect = 3e-18 Identities = 165/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1330 AGAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAACATGG 1389 |||||||||||| || ||||| ||||| |||| |||||||||| | ||||||| || Sbjct 8946 AGAATATGCTCCGTTCGCACGGAGTCTCAACCTTTGAGGAGTCAACAGCCTGGAACACGG 9005 Query 1390 GCTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGCACGCT 1449 || | ||| || | ||||| |||| | ||| || || || || || |||| || Sbjct 9006 ACTGTTTCCCCAGTTGTCAGCTGTTGCATCGGGCACAGCTACAGCTCATGGTGGCACTCT 9065 Query 1450 GGCTGGTGTTAATGTAGGGGAGCAATATCAGCAACTGCGTGAGGCTGCTACTGAAGCTGA 1509 | ||||||| ||| || || ||||| |||||||| | || ||||| | ||| |||| Sbjct 9066 TG--GGTGTTACTGTTGGAGAACAATACCAGCAACTCTGGGAAGCTGCCAGTGAGGCTG- 9122 Query 1510 AAAGCAACTCCAACAATATGCTGAAACACGTGAGTTGGACAACCTTGGGCTTGAT 1564 || || || | | |||||||| | ||| ||||| | || | |||||| Sbjct 9123 --AGAGACGCCCAAAGCATGCTGAAGAGCAAGAGATGGACCAACTAGACCTTGAT 9175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60037327277240