Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_016144.1 Length=18927 Score E Sequences producing significant alignments: (Bits) Value seq47383 93.3 5e-15 >seq47383 Length=13221 Score = 93.3 bits (102), Expect = 5e-15 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 1352 AGAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGTTAATAATCTAGAACATGG 1411 ||| ||||| || || |||||| | ||||| | || || || | || ||||| || Sbjct 8946 AGAATATGCTCCGTTCGCACGGAGTCTCAACCTTTGAGGAGTCAACAGCCTGGAACACGG 9005 Query 1412 CCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTACAGCTCATGGTAGCACACT 1471 |||| ||| ||| | || || | || || ||||||||||||||| |||| || Sbjct 9006 ACTGTTTCCCCAGTTGTCAGCTGTTGCATCGGGCACAGCTACAGCTCATGGTGGCACTCT 9065 Query 1472 AGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGAGGCTGCAACAGAGGCTGA 1531 | || |||| ||| | |||||||||||||||||| | || ||||| | |||||||| Sbjct 9066 TG--GGTGTTACTGTTGGAGAACAATACCAGCAACTCTGGGAAGCTGCCAGTGAGGCTGA 9123 Query 1532 GAAAC 1536 || || Sbjct 9124 GAGAC 9128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60203052992200