Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq242644 109 3e-21 seq207837 109 3e-21 seq23833 100 2e-18 seq234483 78.8 5e-12 >seq242644 Length=798 Score = 109 bits (120), Expect = 3e-21 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 105 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGGATGCGCTCGTGCTCCACCTCC 164 Query 897 CCGACGCGGTCGGGT 911 || || || ||||| Sbjct 165 CCTGCGTGG-CGGGT 178 >seq207837 Length=1616 Score = 109 bits (120), Expect = 3e-21 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1479 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGGATGCGCTCGTGCTCCACCTCC 1538 Query 897 CCGACGCGGTCGGGT 911 || || || ||||| Sbjct 1539 CCTGCGTGG-CGGGT 1552 >seq23833 Length=24817 Score = 100 bits (110), Expect = 2e-18 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 165 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTGCACTCGTGCTCCACCTCC 106 >seq234483 Length=965 Score = 78.8 bits (86), Expect = 5e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| |||| |||||||||| || ||| |||||||||||| Sbjct 385 CTGCCCAGGCATAGTTCACCACCTTTTGGGTCCTAACATGTGTACTCATGCTCCACCTCC 444 Query 897 CCG 899 ||| Sbjct 445 CCG 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2850460729080