Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq71365 333 2e-87 seq70234 329 3e-86 seq72909 286 3e-73 seq72697 259 4e-65 seq72298 172 4e-39 >seq71365 Length=7435499 Score = 333 bits (368), Expect = 2e-87 Identities = 239/273 (88%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| Sbjct 2091020 ATGTGTAGCTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTGAGAGT 2091079 Query 5054 GCCAGATACTGTGCTG-AGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 2091080 GCCAGATACTGTGCTGGAGTGTAATAGGCTACATCCTGCTGAGGAAGGAGACTT--GGGC 2091137 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||| | ||||||||| ||||| ||||||| |||||| ||||||||||||||||| || Sbjct 2091138 AGAGCAAAACATGTTGGGGCTCAAGATCACCTTCTTTGCACTGATGGATGGAAAGGTCTA 2091197 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||||||||||||| | ||| | |||||||||||||||| |||||||||||||| Sbjct 2091198 TGACATCACAGAGTGGGCAGAATGGTAATGTGTGGGAATCTCCCCGGATACCCACAGAGT 2091257 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | | |||||||||||| || ||||| || Sbjct 2091258 CCCCTATTACATCTCATTTGTCTCTCGGATCCC 2091290 >seq70234 Length=4018830 Score = 329 bits (364), Expect = 3e-86 Identities = 236/272 (87%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || | |||||| ||||||||||||||||||||||||||| |||||||||||| | Sbjct 3779732 ATGTGTAGTCAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTAAGAAT 3779673 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||| ||||||||||||| |||||| |||||||||||| | |||||| ||||| Sbjct 3779672 TCCAGATACTGCGCTGAGTGTAATAAGCTGCACCCTGCTGAGGAAAGAGACTTTGGGGCA 3779613 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||| Sbjct 3779612 GAGTCAAGCATGTTGGGGCTCAAGATCGCCTACTTTGCACTGATGGATGGAAAGGTCTAT 3779553 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||| || | ||||| || | ||||||||||| ||||||||||| |||| Sbjct 3779552 GAAATCACAGAGGGGACAGGATGTCAATGCATGGGAATCTCCTCAGATACCCACGGAGTT 3779493 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||| || ||||| || Sbjct 3779492 CCCTATCACATCTCATTTGGCTCTCGGATCCC 3779461 >seq72909 Length=15348459 Score = 286 bits (316), Expect = 3e-73 Identities = 228/272 (84%), Gaps = 7/272 (3%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || | |||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 4048564 ATGTGTAGTCAATGCCAAGGAAAGCATAGGAGGTTCGAAATGGACCGGGAACCTAAGAGT 4048505 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||| || |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 4048504 GCCAGACACAGTGCTGAGTGTAATAGGCTGCATCCTCCTGAGGA----GACTTTTGGGCA 4048449 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||| ||||||||||| |||| ||||||||||| || ||||||||| ||||||| || Sbjct 4048448 AAGTCAAGCATGTTGGGGCTCAGGATCACCTACTTCGCACTGATGGAT-GAAAGGTTTAA 4048390 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || | | |||||||||| || ||||||||| |||||||||||||| ||||| Sbjct 4048389 GACGT--CGGAGTGGGCTGCCTGTGGACGTGTGGGACTCTCCCCAGATACCTGCAGAGCT 4048332 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || ||||||||||||| ||| | ||||| || Sbjct 4048331 CCCTGTCACATCTCATCTGGCCCTCGGATCCC 4048300 >seq72697 Length=8563112 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 7573810 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 7573869 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 7573870 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATC 7573929 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 7573930 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 7573972 Score = 113 bits (124), Expect = 4e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||| |||||||| ||||||||||| |||||||||||||||||||| || | || Sbjct 7574362 CAGAGTGGGCAGGATGCCAACGTGTGGGAATTTCCCCAGATACCCACAGAGTTCCCTATC 7574421 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 7574422 ACATCTCATTTGGCTCTCGGATTCC 7574446 >seq72298 Length=8293739 Score = 172 bits (190), Expect = 4e-39 Identities = 195/259 (75%), Gaps = 27/259 (10%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--- 5050 ||| | || |||||||| ||||||| |||| |||||||||||| ||||| ||| Sbjct 8276880 ATGCGTAGTCGATGCCAAGGAAAGCTTAGG---TTTGAAATGGAC--GGAACTGAAGGAG 8276934 Query 5051 -AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTG 5109 |||||||| | ||| | |||||| | |||||| ||||||||||||||| ||||| || Sbjct 8276935 GAGTGCCAGGTCCTGCG-TGAGTGCCACAGGCTGAGTCCTGCTGAGGAAGGAGACTTCTG 8276993 Query 5110 GGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 ||||||||||||| |||||| |||||| ||||||| |||||| ||| || ||||||| Sbjct 8276994 GGCAGAGTCGAGCGTGTTGG-CCTCAAGATCACCTGCTTTGCACTGCCGGCCAGAAAGGT 8277052 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 |||| || ||||||||||||| ||||||||||| |||| || Sbjct 8277053 CCATGACATTCCAGAGTGGGCTGGG---------------ATCTCCCCAGACACCCGTAG 8277097 Query 5230 AGTCCCTTGTCACATCTCA 5248 ||| ||| ||| ||||||| Sbjct 8277098 AGT-CCTCGTCCCATCTCA 8277115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40084671959640